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NC_048048.2__YP_009810568.1__HOU03_gp330__00355

Bact-Vir

NC_048048.2__YP_009810568.1__HOU03_gp330__00355

Identity

Accession:
NC_048048 ↗
Kingdom:
phage

Quality

62.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrSC

TaxID: 2283272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 126-169
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 55.0 5.45e-01 100.0% 73.9%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 68.0 5.96e-01 100.0% 92.3%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.66 44.0 3.97e-01 70.5% 53.2%
2kruA01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.65 43.0 4.15e-01 70.5% 78.8%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.64 55.0 5.13e-01 100.0% 84.2%
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.64 43.0 4.18e-01 100.0% 63.3%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 4.12e-01 84.1% 57.1%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 47.0 4.42e-01 86.4% 75.9%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 46.0 3.78e-01 97.7% 86.9%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 50.0 3.29e-01 100.0% 23.9%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.58 51.0 3.36e-01 100.0% 62.8%
6vq6I01 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.58 45.0 3.50e-01 100.0% 37.0%
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.58 48.0 4.69e-01 95.5% 96.0%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.58 45.0 3.59e-01 100.0% 69.9%
3fp3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 46.0 3.37e-01 95.5% 31.1%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 39.0 3.40e-01 72.7% 56.9%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 38.0 2.79e-01 70.5% 45.0%
2fq3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.84e-01 100.0% 51.8%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.55 36.0 2.38e-01 70.5% 14.6%
1ciiA03 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.55 43.0 3.09e-01 97.7% 30.6%
1w5sA01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 39.0 3.16e-01 79.5% 81.8%
1yiqA02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 42.0 3.39e-01 100.0% 67.9%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 37.0 3.30e-01 72.7% 57.7%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 36.0 3.46e-01 72.7% 73.6%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 40.0 2.99e-01 88.6% 89.5%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.53 43.0 2.83e-01 100.0% 39.9%
4ol9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 41.0 3.16e-01 100.0% 85.8%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 37.0 3.12e-01 81.8% 41.9%
2dznF00 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 36.0 3.19e-01 72.7% 59.4%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.51 41.0 3.32e-01 100.0% 57.8%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.21e-01 100.0% 91.7%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.50 39.0 2.74e-01 100.0% 74.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4524004 604.11.1.1 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.72 62.0 5.24e-01 100.0% 68.0%
3813965 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 54.0 5.19e-01 100.0% 76.0%
3314581 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.68 59.0 4.59e-01 100.0% 51.0%
4446713 604.11.1.1 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.68 57.0 4.89e-01 100.0% 66.7%
3437734 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.67 59.0 5.19e-01 100.0% 78.5%
3225097 109.4.1.158 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C 0.63 53.0 3.18e-01 100.0% 13.8%
3829435 109.4.1.67 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RINT1_TIP1 0.63 51.0 2.79e-01 95.5% 5.4%
2701721 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.63 50.0 3.68e-01 100.0% 66.2%
3249729 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.20e-01 95.5% 91.3%
4605392 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.61 47.0 3.35e-01 97.7% 56.5%
3627865 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 42.0 3.55e-01 72.7% 54.7%
4637515 148.1.1.13 ↗ alpha arrays › Histone-like › Histone-related › Histone › PCP_red 0.60 40.0 3.95e-01 70.5% 82.0%
4998021 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 40.0 3.37e-01 70.5% 54.7%
3453396 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.59 44.0 3.34e-01 84.1% 35.7%
168332 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.58 50.0 3.29e-01 100.0% 23.9%
4286831 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 39.0 3.68e-01 70.5% 74.5%
3296456 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.56 36.0 3.70e-01 70.5% 70.0%
4407077 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 39.0 3.28e-01 72.7% 50.0%
3677887 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.55 39.0 3.15e-01 72.7% 45.6%
4623858 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.55 44.0 4.37e-01 90.9% 84.4%
3663945 185.1.1.2 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2 0.54 41.0 3.50e-01 95.5% 67.0%
3952640 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 42.0 4.07e-01 100.0% 85.5%
4319295 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.54 39.0 3.08e-01 84.1% 47.6%
4134768 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 38.0 3.32e-01 70.5% 58.6%
3739924 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.53 41.0 3.35e-01 100.0% 63.8%
3506888 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.53 39.0 2.76e-01 90.9% 23.4%
5058985 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.53 40.0 2.93e-01 100.0% 46.9%
None — 0.53 43.0 2.62e-01 100.0% 15.5%
2966553 2005.1.1.31 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CDPS 0.53 43.0 2.82e-01 100.0% 39.5%
4527373 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 34.0 2.79e-01 72.7% 37.5%
4380725 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 43.0 3.72e-01 100.0% 64.0%
4241523 102.1.1.100 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.51 40.0 3.54e-01 97.7% 82.7%
4067861 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 35.0 2.88e-01 81.8% 37.6%