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NC_048048.2__YP_009810613.1__HOU03_gp285__00400

Bact-Vir

NC_048048.2__YP_009810613.1__HOU03_gp285__00400

Identity

Accession:
NC_048048 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 53.0 4.96e-01 83.0% 65.7%
7krzA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 53.0 4.65e-01 98.1% 100.0%
5cb1A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.62 47.0 4.46e-01 92.5% 69.8%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 43.0 3.25e-01 84.9% 66.4%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 38.0 3.40e-01 83.0% 65.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895420 376.1.1.47 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › HECA 0.69 44.0 3.65e-01 73.6% 35.7%
5030281 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.52 43.0 3.24e-01 100.0% 53.8%