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NC_048048.2__YP_009810718.1__HOU03_gp006__00006

Bact-Vir

NC_048048.2__YP_009810718.1__HOU03_gp006__00006

Identity

Accession:
NC_048048 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jeanschmidtviridae› Bertelyvirus› Caulobacter_phage_CcrSC

TaxID: 2283272

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-104
PDB
Domain cluster: rep: IMGVR_UViG_3300025630_003131-3300025630-Ga0208004_100049515__D42-103
D2 high residues 129-207
PDB
Domain cluster: rep: ON529853.1__UTC29124.1__BAMBUS_00410__00041__D3-94
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.78 61.0 4.78e-01 83.5% 80.6%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 52.0 4.14e-01 74.7% 45.8%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.72 52.0 3.78e-01 74.7% 91.9%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 51.0 4.06e-01 77.2% 83.6%
2yqdA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 51.0 4.44e-01 79.7% 84.2%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.68 47.0 4.64e-01 100.0% 68.3%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.63 46.0 3.29e-01 75.9% 44.1%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.61 44.0 4.61e-01 78.5% 93.0%
1ezfC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 45.0 3.02e-01 81.0% 45.3%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.80e-01 78.5% 67.0%
2g3kA00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.56 44.0 4.23e-01 88.6% 75.5%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 40.0 3.84e-01 79.7% 86.7%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.55 45.0 3.89e-01 91.1% 75.6%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.53 43.0 3.92e-01 86.1% 86.4%
3nskB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 40.0 3.88e-01 84.8% 87.0%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 38.0 3.26e-01 78.5% 82.5%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 2.69e-01 86.1% 60.9%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.66e-01 89.9% 71.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486940 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.78 57.0 4.00e-01 75.9% 61.7%
3411108 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.72 52.0 4.36e-01 75.9% 72.6%
3258252 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.70 53.0 4.69e-01 81.0% 84.3%
3622515 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 48.0 4.70e-01 75.9% 78.8%
3416038 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.65 47.0 4.06e-01 77.2% 88.5%
3577233 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 47.0 5.05e-01 75.9% 95.7%
4977369 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.63 48.0 3.29e-01 81.0% 54.8%
5072811 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.62 51.0 3.74e-01 89.9% 61.4%
3714091 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 52.0 5.39e-01 94.9% 97.3%
3641172 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.61 44.0 4.29e-01 77.2% 84.4%
4982660 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.61 44.0 3.15e-01 75.9% 58.1%
5032045 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.61 45.0 4.15e-01 78.5% 69.0%
5050698 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.59 54.0 4.52e-01 100.0% 61.2%
3640333 109.4.1.628 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.59 44.0 2.60e-01 79.7% 12.7%
4286824 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.57 44.0 4.21e-01 82.3% 74.4%
168175 633.2.1.1 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.55 40.0 3.84e-01 79.7% 86.7%
3331809 375.1.9.23 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Sterile 0.53 46.0 3.63e-01 100.0% 50.9%
2755028 6004.1.1.2 ↗ extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 0.53 46.0 4.08e-01 98.7% 67.8%