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NC_048053.1__YP_009811413.1__HOU08_gp299__00299
Bact-VirNC_048053.1__YP_009811413.1__HOU08_gp299__00299
Identity
- Accession:
- NC_048053 ↗
- Kingdom:
- phage
Quality
65.5
mean pLDDT
Taxonomy
TaxID: 2283031
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-102
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6lbsB01 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.71 | 52.0 | 5.70e-01 | 85.9% | 94.9% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 56.0 | 5.79e-01 | 99.0% | 93.4% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.66 | 51.0 | 5.34e-01 | 100.0% | 90.9% |
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 44.0 | 4.63e-01 | 87.9% | 79.3% |
| 5hvqC01 | 3.90.1150.220 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.65 | 48.0 | 5.29e-01 | 100.0% | 97.5% |
| 1rjjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 40.0 | 3.86e-01 | 70.7% | 56.8% |
| 7bqjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 38.0 | 4.10e-01 | 100.0% | 74.1% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 39.0 | 3.85e-01 | 70.7% | 61.2% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 53.0 | 5.32e-01 | 99.0% | 95.1% |
| 3c0kA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 49.0 | 3.82e-01 | 93.9% | 40.7% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.60 | 44.0 | 4.61e-01 | 92.9% | 86.7% |
| 2ppqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 36.0 | 3.69e-01 | 74.7% | 68.1% |
| 6tpiB01 | 3.30.70.3040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 3.71e-01 | 71.7% | 69.5% |
| 2q83B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 35.0 | 3.50e-01 | 73.7% | 63.6% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.54 | 35.0 | 3.51e-01 | 70.7% | 64.0% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 4.51e-01 | 99.0% | 100.0% |
| 3u6yA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.53 | 41.0 | 4.19e-01 | 91.9% | 85.9% |
| 2ch0A01 | 1.10.10.1180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain | 0.52 | 41.0 | 4.17e-01 | 98.0% | 86.7% |
| 3htxD03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 44.0 | 3.39e-01 | 91.9% | 43.4% |
| 4j3cB02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.50 | 34.0 | 2.93e-01 | 78.8% | 41.8% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1175570 | 101.1.2.17 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 56.0 | 5.17e-01 | 86.9% | 67.5% |
| 3036035 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.69 | 55.0 | 5.45e-01 | 84.8% | 80.0% |
| 3946399 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 49.0 | 4.50e-01 | 99.0% | 58.5% |
| 5031250 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.66 | 46.0 | 4.85e-01 | 88.9% | 81.1% |
| 3739376 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.65 | 48.0 | 4.83e-01 | 89.9% | 77.6% |
| 3167302 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.64 | 50.0 | 5.12e-01 | 83.8% | 96.8% |
| 3789380 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 5.09e-01 | 99.0% | 98.7% |
| 4019332 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.61 | 50.0 | 5.26e-01 | 100.0% | 97.8% |
| 4934322 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 48.0 | 5.01e-01 | 88.9% | 93.3% |
| 3575538 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.60 | 34.0 | 3.34e-01 | 70.7% | 49.1% |
| 3590646 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.60 | 52.0 | 4.84e-01 | 100.0% | 76.8% |
| 4991879 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.46e-01 | 89.9% | 77.1% |
| 3178421 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.59 | 47.0 | 3.13e-01 | 84.8% | 24.9% |
| 4028118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 40.0 | 3.99e-01 | 100.0% | 66.7% |
| 3250093 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.58 | 42.0 | 3.13e-01 | 93.9% | 29.0% |
| 3509319 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 52.0 | 4.76e-01 | 99.0% | 87.7% |
| 4218945 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.58 | 49.0 | 4.57e-01 | 100.0% | 74.4% |
| 3642268 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.58 | 46.0 | 4.31e-01 | 84.8% | 78.3% |
| 3786023 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.58 | 43.0 | 3.33e-01 | 100.0% | 33.3% |
| 5046705 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.58 | 43.0 | 4.27e-01 | 92.9% | 75.2% |
| 1298616 | 101.1.2.80 ↗ | alpha arrays › HTH › HTH › winged helix domain › RepA_N | 0.58 | 43.0 | 3.97e-01 | 100.0% | 59.8% |
| 3829946 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.57 | 44.0 | 3.84e-01 | 83.8% | 55.0% |
| 3932128 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 4.07e-01 | 91.9% | 60.7% |
| 4990919 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 4.11e-01 | 100.0% | 75.0% |
| 4392336 | 101.1.2.80 ↗ | alpha arrays › HTH › HTH › winged helix domain › RepA_N | 0.57 | 45.0 | 4.07e-01 | 100.0% | 61.4% |
| 3811740 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.57 | 42.0 | 3.20e-01 | 81.8% | 32.2% |
| 3440141 | 3012.1.1.11 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 | 0.57 | 43.0 | 4.35e-01 | 81.8% | 80.0% |
| 4310506 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.57 | 46.0 | 3.56e-01 | 88.9% | 39.6% |
| 3336774 | 310.3.1.13 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27677 | 0.56 | 43.0 | 4.33e-01 | 80.8% | 84.0% |
| 4949867 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.56 | 42.0 | 3.86e-01 | 84.8% | 58.5% |
| 3784677 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.56 | 46.0 | 3.56e-01 | 99.0% | 40.0% |
| 3791454 | 328.8.1.0 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 | 0.56 | 47.0 | 4.45e-01 | 99.0% | 76.7% |
| 3520570 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.56 | 42.0 | 4.10e-01 | 92.9% | 72.7% |
| 3520324 | 312.1.1.10 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › DUF4931_N | 0.55 | 42.0 | 3.94e-01 | 81.8% | 71.2% |
| 3185186 | 304.9.1.90 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29326 | 0.55 | 36.0 | 3.44e-01 | 70.7% | 56.5% |
| 3579316 | 2003.1.5.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 | 0.55 | 39.0 | 2.97e-01 | 82.8% | 30.1% |
| 4945121 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.54 | 41.0 | 3.71e-01 | 82.8% | 60.0% |
| 4029431 | 101.1.2.634 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27571 | 0.54 | 47.0 | 4.21e-01 | 100.0% | 76.0% |
| 3637467 | 101.1.2.74 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cnd2 | 0.54 | 45.0 | 4.47e-01 | 94.9% | 88.3% |
| 3470427 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.54 | 45.0 | 3.14e-01 | 91.9% | 27.8% |
| 4017175 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.54 | 45.0 | 3.41e-01 | 91.9% | 37.6% |
| 4034172 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 4.59e-01 | 99.0% | 98.9% |
| 5058449 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.54 | 42.0 | 4.02e-01 | 100.0% | 73.9% |
| 5045142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.91e-01 | 100.0% | 89.7% |
| 3386491 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.53 | 44.0 | 3.20e-01 | 91.9% | 76.2% |
| 4011441 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.53 | 40.0 | 2.67e-01 | 82.8% | 20.9% |
| 3715972 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.25e-01 | 100.0% | 37.4% |
| 5052217 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.52 | 46.0 | 3.47e-01 | 99.0% | 54.5% |
| 3587236 | 101.1.2.80 ↗ | alpha arrays › HTH › HTH › winged helix domain › RepA_N | 0.52 | 41.0 | 3.67e-01 | 100.0% | 57.3% |
| 3876440 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.52 | 37.0 | 2.50e-01 | 72.7% | 85.9% |
| 5049735 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.52 | 43.0 | 2.96e-01 | 90.9% | 26.1% |
| 3393722 | 101.1.2.149 ↗ | alpha arrays › HTH › HTH › winged helix domain › Costars | 0.52 | 38.0 | 3.62e-01 | 100.0% | 63.2% |
| 3499602 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 34.0 | 3.39e-01 | 70.7% | 65.0% |
| 5019185 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 37.0 | 3.78e-01 | 98.0% | 77.6% |
| 3743759 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 36.0 | 3.47e-01 | 77.8% | 62.6% |
| 3653619 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.51 | 39.0 | 3.10e-01 | 80.8% | 70.0% |
| 3187395 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.50 | 39.0 | 3.31e-01 | 83.8% | 93.1% |