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NC_048053.1__YP_009811415.1__HOU08_gp301__00301

Bact-Vir

NC_048053.1__YP_009811415.1__HOU08_gp301__00301

Identity

Accession:
NC_048053 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-83
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pm3A00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.62 50.0 5.23e-01 100.0% 97.1%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.42e-01 97.4% 83.3%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 36.0 3.37e-01 70.1% 77.5%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.95e-01 100.0% 63.2%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 43.0 3.64e-01 96.1% 73.0%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 3.37e-01 87.0% 76.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027293 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.68 58.0 5.77e-01 98.7% 87.5%
5040153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 38.0 3.93e-01 92.2% 68.0%
5057134 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.59 53.0 5.23e-01 98.7% 93.8%
3827097 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 37.0 3.30e-01 70.1% 71.8%
3601135 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 43.0 2.97e-01 97.4% 71.8%
3520837 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.57e-01 92.2% 72.6%
D2 high residues 393-479
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.63 46.0 3.93e-01 79.3% 82.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.89e-01 82.8% 100.0%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.66e-01 73.6% 78.2%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 40.0 4.25e-01 71.3% 90.5%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 49.0 4.73e-01 96.6% 93.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 39.0 3.12e-01 72.4% 67.4%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.62e-01 70.1% 63.9%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 49.0 4.58e-01 98.9% 85.0%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.56 46.0 3.72e-01 90.8% 77.0%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.56 48.0 4.57e-01 97.7% 98.1%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 48.0 4.53e-01 98.9% 93.5%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 48.0 4.69e-01 97.7% 98.9%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 48.0 4.33e-01 97.7% 82.1%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 41.0 3.76e-01 80.5% 79.8%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 48.0 4.64e-01 97.7% 93.8%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.55 39.0 3.23e-01 88.5% 40.9%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 48.0 4.55e-01 98.9% 96.2%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 47.0 4.57e-01 98.9% 100.0%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 47.0 4.31e-01 98.9% 81.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 40.0 3.82e-01 81.6% 90.8%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 33.0 3.41e-01 82.8% 63.1%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 46.0 4.50e-01 98.9% 96.9%
3nuiA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 44.0 3.76e-01 94.3% 80.8%
3ffvA00 3.40.1580.20 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein 0.52 39.0 3.21e-01 82.8% 60.8%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 4.04e-01 97.7% 98.4%
3oksA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.33e-01 88.5% 63.6%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 33.0 3.70e-01 85.1% 96.6%
1o6zA01 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.51 35.0 2.89e-01 71.3% 89.4%
3dodB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.53e-01 95.4% 70.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 4.04e-01 94.3% 83.5%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 44.0 2.94e-01 98.9% 49.7%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.91e-01 100.0% 90.1%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 44.0 3.95e-01 98.9% 82.3%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.50 41.0 3.12e-01 94.3% 94.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000403 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.75 43.0 5.46e-01 73.6% 100.0%
3256498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.96e-01 74.7% 98.2%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.77e-01 73.6% 93.3%
3581143 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 39.0 4.37e-01 70.1% 80.0%
3391556 4.1.1.384 beta barrels › SH3 › SH3 › SH3 › Tudor_krimper_1st 0.64 45.0 4.27e-01 73.6% 76.2%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.79e-01 74.7% 98.2%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.66e-01 75.9% 91.7%
4269256 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.63 40.0 4.61e-01 75.9% 93.3%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.63 38.0 4.61e-01 70.1% 96.4%
3816553 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.63 39.0 4.64e-01 70.1% 98.2%
3744277 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 36.0 4.53e-01 98.9% 100.0%
3274551 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 39.0 4.20e-01 70.1% 74.7%
3519597 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 41.0 3.98e-01 72.4% 62.1%
3328489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 36.0 4.02e-01 97.7% 74.3%
3835464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.33e-01 72.4% 82.9%
3918523 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.60 34.0 2.71e-01 82.8% 26.7%
3821920 4.1.1.283 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.60 37.0 4.44e-01 70.1% 100.0%
3558774 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.60 39.0 4.58e-01 73.6% 98.3%
3671396 4.1.1.316 beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.59 40.0 4.29e-01 75.9% 82.2%
3592541 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.03e-01 73.6% 72.5%
5014686 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.58 37.0 4.26e-01 83.9% 100.0%
3941320 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.58 39.0 4.22e-01 78.2% 81.3%
3925069 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.58 42.0 3.58e-01 100.0% 47.1%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.58 39.0 3.45e-01 70.1% 70.0%
3919131 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.58 50.0 4.56e-01 98.9% 87.5%
3365104 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.57 40.0 4.55e-01 73.6% 98.5%
3315100 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.50e-01 73.6% 96.9%
3679595 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.57 40.0 4.27e-01 74.7% 85.1%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 39.0 4.37e-01 71.3% 96.9%
4336817 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 49.0 4.84e-01 98.9% 98.9%
3323529 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.56 40.0 4.43e-01 73.6% 98.5%
3921563 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 37.0 3.89e-01 100.0% 73.8%
3211839 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 41.0 4.53e-01 78.2% 95.7%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 38.0 3.28e-01 70.1% 45.9%
3838232 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 49.0 4.81e-01 98.9% 96.8%
3815479 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.01e-01 70.1% 89.3%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.10e-01 72.4% 85.3%
3323551 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.55 38.0 4.32e-01 72.4% 98.5%
3314214 7502.1.1.7 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.54 47.0 4.40e-01 98.9% 89.1%
3461921 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.54 41.0 3.91e-01 80.5% 93.0%
3815480 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 38.0 4.20e-01 73.6% 98.5%
4003123 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 37.0 4.19e-01 97.7% 95.4%
3568625 883.1.1.6 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.53 38.0 3.24e-01 74.7% 82.1%
3926623 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 39.0 4.18e-01 100.0% 93.2%
4949773 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.52 41.0 3.45e-01 96.6% 50.3%
3726238 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 2.97e-01 97.7% 52.2%
3620934 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 38.0 4.00e-01 92.0% 85.0%
3581719 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 40.0 3.65e-01 85.1% 63.5%
3247188 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 40.0 4.24e-01 88.5% 98.7%
None 0.51 44.0 2.88e-01 98.9% 32.0%
D3 medium residues 175-231
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.74 47.0 3.09e-01 100.0% 15.5%
2bjoA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.73 63.0 5.37e-01 98.2% 61.7%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.72 61.0 5.25e-01 98.2% 61.7%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.72 63.0 4.75e-01 100.0% 45.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.68 41.0 4.41e-01 80.7% 70.8%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 59.0 4.58e-01 100.0% 45.3%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 50.0 4.12e-01 100.0% 47.2%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 51.0 4.71e-01 94.7% 100.0%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 3.57e-01 96.5% 39.6%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 51.0 4.58e-01 96.5% 95.1%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 40.0 3.53e-01 84.2% 45.3%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.46e-01 91.2% 39.3%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 38.0 2.71e-01 71.9% 71.8%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 44.0 3.69e-01 89.5% 62.7%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 48.0 3.42e-01 100.0% 94.3%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 42.0 2.80e-01 87.7% 27.8%
4ifdE00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 44.0 2.97e-01 100.0% 36.0%
1fi8C00 2.60.40.550 Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin 0.54 37.0 3.42e-01 91.2% 53.8%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 2.93e-01 91.2% 29.3%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 2.94e-01 96.5% 36.6%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 34.0 3.20e-01 100.0% 51.9%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.59e-01 96.5% 87.1%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 38.0 2.63e-01 89.5% 89.9%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.50 33.0 3.48e-01 91.2% 95.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3769484 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.70 42.0 3.75e-01 86.0% 42.5%
4898997 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.70 51.0 4.76e-01 84.2% 62.5%
4899007 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.67 51.0 4.74e-01 91.2% 66.7%
3454185 207.1.1.57 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 0.66 57.0 3.28e-01 100.0% 39.7%
3672794 207.1.1.67 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6 0.65 55.0 3.23e-01 100.0% 42.4%
4003638 206.1.3.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.63 53.0 3.65e-01 98.2% 44.3%
3373362 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 2.39e-01 71.9% 7.6%
4053989 304.9.1.71 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD 0.59 51.0 3.88e-01 98.2% 42.9%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 40.0 2.75e-01 70.2% 88.2%
5046390 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 41.0 3.72e-01 91.2% 52.5%
5044501 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 49.0 4.06e-01 96.5% 70.9%
3255196 4970.1.1.28 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › SPC25 0.58 49.0 4.10e-01 100.0% 54.4%
5000798 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.57 39.0 2.77e-01 71.9% 67.6%
3701672 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.56 40.0 2.81e-01 100.0% 25.3%
3380640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 42.0 2.84e-01 84.2% 33.6%
3969531 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.55 47.0 2.88e-01 98.2% 47.7%
3616837 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.88e-01 98.2% 66.7%
3255418 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 46.0 2.89e-01 100.0% 56.1%
3574545 210.1.2.6 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Phospholip_B 0.55 46.0 2.92e-01 100.0% 56.6%
4989899 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.55 44.0 2.93e-01 100.0% 50.8%
4444422 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 47.0 3.75e-01 100.0% 96.7%
5031862 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 41.0 3.04e-01 86.0% 29.4%
3488421 210.1.2.6 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Phospholip_B 0.53 45.0 2.90e-01 100.0% 69.3%
3903334 212.1.1.10 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.53 44.0 3.12e-01 100.0% 47.5%
3930569 384.1.1.8 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › BPTI_nem 0.52 36.0 3.24e-01 77.2% 94.4%
3580978 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 2.83e-01 98.2% 23.9%
3275646 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.03e-01 98.2% 39.5%
1505358 304.51.1.7 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.50 39.0 2.87e-01 87.7% 47.9%
D4 medium residues 249-333
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.77 47.0 5.64e-01 75.3% 96.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 48.0 5.48e-01 76.5% 85.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 48.0 5.78e-01 74.1% 100.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.28e-01 71.8% 57.0%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.22e-01 75.3% 83.1%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.69 44.0 4.59e-01 76.5% 71.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.75e-01 71.8% 76.7%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.66 56.0 4.17e-01 90.6% 56.8%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.22e-01 70.6% 66.3%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.68e-01 71.8% 79.5%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 39.0 4.81e-01 91.8% 96.3%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 5.26e-01 84.7% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.86e-01 74.1% 97.2%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.90e-01 72.9% 63.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 42.0 4.40e-01 100.0% 81.0%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 4.34e-01 87.1% 88.3%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 4.20e-01 87.1% 85.6%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.56 40.0 3.93e-01 75.3% 92.4%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 45.0 4.00e-01 88.2% 76.4%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 4.18e-01 88.2% 86.0%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 4.09e-01 88.2% 78.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.57e-01 85.9% 90.1%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 43.0 4.12e-01 87.1% 86.1%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 43.0 4.15e-01 87.1% 88.9%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 43.0 4.14e-01 88.2% 86.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 37.0 3.19e-01 71.8% 57.1%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 42.0 4.08e-01 88.2% 88.8%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 43.0 4.03e-01 91.8% 89.3%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 47.0 4.06e-01 97.6% 79.4%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.53 39.0 4.07e-01 77.6% 94.7%
5h1kA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.06e-01 98.8% 96.8%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.72e-01 82.4% 86.4%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 43.0 4.13e-01 92.9% 91.8%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 38.0 3.34e-01 78.8% 73.3%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.98e-01 96.5% 95.5%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 39.0 3.92e-01 85.9% 91.2%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 43.0 3.49e-01 92.9% 55.5%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 41.0 3.70e-01 92.9% 77.3%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 39.0 4.01e-01 87.1% 96.4%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 48.0 5.75e-01 81.2% 94.5%
5040416 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 45.0 5.60e-01 74.1% 98.0%
3622055 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 46.0 4.61e-01 70.6% 62.4%
3256498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.45e-01 77.6% 96.4%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 46.0 4.61e-01 71.8% 63.5%
3465976 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 45.0 5.08e-01 74.1% 83.1%
3936430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 4.74e-01 71.8% 68.8%
3828348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 5.16e-01 72.9% 84.6%
3393360 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 46.0 4.12e-01 71.8% 47.8%
4015071 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.71e-01 82.4% 92.9%
3663761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 4.25e-01 71.8% 52.4%
3911241 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 46.0 4.32e-01 71.8% 55.0%
3665882 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 49.0 4.14e-01 71.8% 44.4%
3340900 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 45.0 5.11e-01 72.9% 84.6%
3811611 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 45.0 4.78e-01 70.6% 73.3%
3230520 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 46.0 4.59e-01 70.6% 63.3%
3577505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 46.0 4.62e-01 70.6% 65.9%
3570700 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 47.0 4.22e-01 71.8% 50.4%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.65e-01 76.5% 70.7%
3627914 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 49.0 4.66e-01 71.8% 61.0%
3359784 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 45.0 5.06e-01 70.6% 84.6%
3774108 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 44.0 4.29e-01 71.8% 56.8%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.70 54.0 5.34e-01 81.2% 78.9%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 44.0 5.11e-01 76.5% 90.0%
4055256 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 45.0 4.49e-01 71.8% 62.2%
3935130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 44.0 5.32e-01 87.1% 98.2%
3358753 4.1.1.381 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.70 45.0 3.54e-01 81.2% 33.3%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 46.0 3.90e-01 71.8% 42.2%
3671986 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.70 44.0 4.76e-01 76.5% 77.1%
3558926 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 46.0 4.51e-01 71.8% 63.3%
3749245 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 54.0 4.65e-01 82.4% 54.6%
3835464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 46.0 5.02e-01 72.9% 82.9%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.19e-01 72.9% 98.2%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 45.0 4.84e-01 71.8% 80.0%
3452043 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 44.0 3.80e-01 70.6% 41.5%
3313119 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 44.0 4.55e-01 74.1% 68.8%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 53.0 5.26e-01 82.4% 78.9%
3241793 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 44.0 4.15e-01 71.8% 53.3%
3832128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.29e-01 71.8% 58.9%
3936926 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.10e-01 85.9% 89.2%
3815479 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.59e-01 72.9% 73.3%
3815480 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.77e-01 72.9% 83.1%
3626694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.33e-01 71.8% 62.2%
3662072 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 3.97e-01 71.8% 47.5%
3214474 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.68 46.0 4.39e-01 70.6% 63.0%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.68 46.0 4.99e-01 81.2% 85.7%
3313139 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 45.0 3.51e-01 71.8% 33.1%
3317400 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 46.0 3.85e-01 70.6% 42.9%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 46.0 3.53e-01 75.3% 31.6%
3830763 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 44.0 4.55e-01 71.8% 71.2%
3514970 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 46.0 4.52e-01 71.8% 66.7%
3356591 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.41e-01 70.6% 63.2%
3535268 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 43.0 4.13e-01 71.8% 57.9%
3449268 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.59e-01 75.3% 70.6%
3747392 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 48.0 5.32e-01 77.6% 98.5%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.66 45.0 3.99e-01 81.2% 50.0%
3925069 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.65 50.0 4.26e-01 82.4% 91.4%
3467678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 3.95e-01 71.8% 53.6%
3211839 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 47.0 5.13e-01 81.2% 97.1%
4258307 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 46.0 3.18e-01 81.2% 33.2%
3669492 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 45.0 3.78e-01 82.4% 48.6%
3231704 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 43.0 4.88e-01 87.1% 100.0%
3881121 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 38.0 3.69e-01 70.6% 57.0%
3620934 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 44.0 4.58e-01 95.3% 83.7%
3408556 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 49.0 4.48e-01 90.6% 90.0%
4640921 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 44.0 4.33e-01 87.1% 90.3%
3923681 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.54 38.0 3.00e-01 75.3% 94.5%
4155197 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.53 48.0 3.68e-01 100.0% 69.5%
3474075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.32e-01 98.8% 94.6%
3488995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 37.0 4.10e-01 96.5% 96.9%
4477176 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 40.0 4.02e-01 85.9% 91.8%
3465992 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 42.0 2.88e-01 94.1% 87.9%
3925642 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 46.0 4.38e-01 100.0% 87.0%