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NC_048058.1__YP_009811928.1__HOU13_gp08__00008

Bact-Vir

NC_048058.1__YP_009811928.1__HOU13_gp08__00008

Identity

Accession:
NC_048058 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Phimunavirus› Pectobacterium_phage_Lelidair

TaxID: 2320195

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-81
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 54.0 3.84e-01 100.0% 24.1%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.61e-01 100.0% 68.8%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 5.10e-01 96.7% 96.1%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.28e-01 100.0% 60.0%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.62 47.0 4.59e-01 100.0% 74.2%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.63e-01 100.0% 81.2%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 35.0 4.04e-01 77.0% 81.8%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 5.12e-01 100.0% 98.3%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.59 45.0 4.41e-01 100.0% 75.4%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 5.13e-01 100.0% 98.4%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.84e-01 100.0% 91.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 5.14e-01 100.0% 98.4%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 5.01e-01 96.7% 100.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.67e-01 98.4% 98.1%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.29e-01 96.7% 81.7%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.81e-01 100.0% 95.2%
6fgcA02 3.90.105.10 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Molybdopterin biosynthesis moea protein, domain 2 0.58 39.0 3.99e-01 100.0% 74.1%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.00e-01 77.0% 95.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.83e-01 98.4% 92.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.56e-01 96.7% 100.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.49e-01 98.4% 78.7%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.45e-01 98.4% 83.6%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.87e-01 96.7% 98.3%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.68e-01 98.4% 93.3%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.17e-01 100.0% 68.7%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 45.0 4.21e-01 98.4% 70.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.83e-01 98.4% 98.3%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 49.0 4.27e-01 100.0% 64.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.80e-01 100.0% 96.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.54e-01 100.0% 84.3%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 3.75e-01 86.9% 70.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.34e-01 100.0% 83.8%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 4.23e-01 91.8% 100.0%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 49.0 4.59e-01 100.0% 89.2%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.60e-01 100.0% 96.7%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.42e-01 96.7% 100.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.64e-01 100.0% 95.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.99e-01 98.4% 80.0%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.45e-01 98.4% 94.2%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 46.0 4.55e-01 96.7% 92.5%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.63e-01 96.7% 100.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.28e-01 98.4% 81.9%
2kssA01 2.30.30.630 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.35e-01 96.7% 100.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.02e-01 100.0% 73.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.77e-01 100.0% 81.0%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.51 39.0 3.42e-01 100.0% 52.4%
1rm6A05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 42.0 3.16e-01 98.4% 57.2%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4501600 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.75 66.0 4.68e-01 100.0% 80.0%
4927873 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 51.0 5.22e-01 96.7% 75.0%
4133267 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.66 49.0 5.22e-01 95.1% 87.3%
4304365 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.65 47.0 4.46e-01 95.1% 65.7%
1108894 4.1.1.122 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_17 0.64 47.0 4.91e-01 96.7% 90.7%
3759446 4.1.1.73 ↗ beta barrels › SH3 › SH3 › SH3 › Cul7 0.63 50.0 4.42e-01 100.0% 58.9%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 53.0 4.23e-01 100.0% 46.9%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.92e-01 100.0% 89.3%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 52.0 4.64e-01 100.0% 70.0%
3522910 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 52.0 4.85e-01 100.0% 78.7%
3620934 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 51.0 4.73e-01 100.0% 73.8%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.20e-01 98.4% 98.3%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 51.0 4.91e-01 100.0% 84.3%
674 4999.1.1.1 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.59 45.0 4.56e-01 100.0% 83.9%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.49e-01 95.1% 92.5%
3921563 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 50.0 4.60e-01 98.4% 72.5%
3908332 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 47.0 4.69e-01 95.1% 86.2%
3894023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.29e-01 93.4% 95.3%
3872095 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 46.0 4.76e-01 93.4% 96.4%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 50.0 4.98e-01 100.0% 90.8%
3275623 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 49.0 4.48e-01 100.0% 69.4%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 49.0 4.86e-01 98.4% 89.2%
4019491 601.16.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_9 0.58 51.0 3.56e-01 100.0% 34.6%
3203654 601.16.1.12 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.58 51.0 3.57e-01 100.0% 35.5%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 50.0 4.82e-01 100.0% 84.3%
3697262 601.1.1.120 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › SH3_9 0.58 51.0 3.62e-01 100.0% 36.4%
3270256 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 46.0 4.71e-01 96.7% 96.6%
3224981 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 47.0 4.75e-01 98.4% 95.0%
3218194 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 50.0 4.68e-01 100.0% 80.0%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 50.0 4.94e-01 96.7% 95.4%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 50.0 4.95e-01 98.4% 93.7%
3180487 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 51.0 3.58e-01 100.0% 36.4%
3776390 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.58 49.0 4.07e-01 100.0% 53.0%
4632138 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 47.0 4.64e-01 98.4% 89.2%
3786196 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 51.0 3.47e-01 100.0% 45.5%
3841524 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 50.0 4.15e-01 100.0% 55.5%
3495880 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.57 48.0 2.90e-01 96.7% 15.5%
3775595 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.82e-01 100.0% 90.8%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 3.89e-01 96.7% 65.7%
3923675 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 47.0 4.69e-01 98.4% 90.8%
3535424 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 49.0 4.70e-01 100.0% 84.3%
3777744 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 50.0 4.41e-01 100.0% 70.0%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.37e-01 98.4% 98.0%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 3.96e-01 96.7% 71.7%
4171510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.48e-01 100.0% 73.8%
3797970 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 47.0 4.24e-01 98.4% 65.6%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.76e-01 100.0% 85.7%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.56 44.0 3.42e-01 100.0% 36.1%
3323529 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.56 46.0 4.61e-01 100.0% 90.8%
3620933 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 46.0 4.34e-01 98.4% 73.8%
3514453 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 46.0 4.34e-01 96.7% 74.7%
3633434 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 48.0 4.65e-01 100.0% 84.3%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.56 43.0 4.13e-01 98.4% 72.6%
2106277 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.56 42.0 3.50e-01 100.0% 42.7%
3607307 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 49.0 4.76e-01 100.0% 91.4%
3920103 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 47.0 4.22e-01 100.0% 66.7%
3270519 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 47.0 4.65e-01 100.0% 90.8%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 47.0 4.66e-01 98.4% 98.5%
3619598 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 44.0 4.03e-01 93.4% 64.7%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.55 47.0 3.78e-01 100.0% 83.1%
3769245 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 45.0 4.33e-01 100.0% 78.7%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 45.0 4.35e-01 100.0% 85.7%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.07e-01 95.1% 89.1%
3624228 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 46.0 4.32e-01 96.7% 96.0%
3593607 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.01e-01 98.4% 92.7%
3495904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 46.0 4.52e-01 96.7% 100.0%
3723808 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 46.0 4.52e-01 100.0% 93.8%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.96e-01 98.4% 85.0%
3928050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.25e-01 98.4% 40.7%
3498983 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 2.61e-01 98.4% 24.2%
3500448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.97e-01 100.0% 84.6%