←Back to structures

NC_048060.1__YP_009812035.1__HOU15_gp05__00005

Bact-Vir

NC_048060.1__YP_009812035.1__HOU15_gp05__00005

Identity

Accession:
NC_048060 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Aarhusvirus› Dickeya_phage_Mysterion

TaxID: 2320193

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-126
PDB
Domain cluster: rep: MN013085.1__QEG13341.1__NAHI_5__00005__D3-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27024.1 best Phage_T7_kinase 162.6 2.20e-47 100.0% 28.6%
D2 medium residues 131-230
PDB
Domain cluster: rep: NC_047937.1__YP_009799181.1__HOS91_gp02__00002__D152-229
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27024.1 best Phage_T7_kinase 88.4 7.80e-25 98.0% 20.3%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 36.0 4.02e-01 79.0% 74.4%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 42.0 4.11e-01 73.0% 86.1%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.57 44.0 4.25e-01 84.0% 83.9%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 48.0 3.60e-01 98.0% 97.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.55 41.0 4.46e-01 88.0% 92.9%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 39.0 3.70e-01 74.0% 100.0%
4cmyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 3.37e-01 80.0% 51.5%
2ce7B03 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.51 43.0 3.72e-01 97.0% 82.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202292 101.38.1.3 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF6891 0.74 49.0 5.69e-01 71.0% 95.7%
3288128 1079.1.1.7 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › SfLAP 0.66 45.0 3.74e-01 70.0% 86.7%
3261605 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.64 46.0 5.08e-01 92.0% 95.0%
3277060 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 42.0 4.69e-01 84.0% 92.0%
3758476 3352.1.1.13 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › TMTC_DUF1736 0.62 46.0 2.98e-01 77.0% 86.7%
5017220 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 40.0 4.67e-01 93.0% 100.0%
3252439 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.62 44.0 4.79e-01 91.0% 92.5%
3958076 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 52.0 3.74e-01 95.0% 45.1%
4927052 7014.1.1.2 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.60 49.0 4.63e-01 94.0% 73.3%
3713666 601.1.2.90 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Not3 0.58 42.0 4.06e-01 76.0% 88.7%
3250488 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.73e-01 81.0% 19.4%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.56 41.0 4.37e-01 86.0% 90.6%
3250261 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 39.0 4.09e-01 87.0% 80.0%
3193043 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 43.0 2.77e-01 83.0% 22.4%
3411675 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.55 42.0 3.94e-01 83.0% 80.0%
3256810 109.46.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › TPR1-like_2nd 0.54 43.0 4.11e-01 85.0% 90.4%
4456963 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.52 38.0 3.08e-01 75.0% 45.4%
3839989 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.52 38.0 3.20e-01 77.0% 60.6%
4562372 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.51 41.0 3.88e-01 93.0% 73.1%
3463817 109.4.1.843 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM 0.50 41.0 2.50e-01 91.0% 21.0%
3721941 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.50 34.0 3.77e-01 81.0% 87.5%
D3 medium residues 302-352
PDB