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NC_048060.1__YP_009812037.1__HOU15_gp07__00007

Bact-Vir

NC_048060.1__YP_009812037.1__HOU15_gp07__00007

Identity

Accession:
NC_048060 ↗
Kingdom:
phage

Quality

66.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Aarhusvirus› Dickeya_phage_Mysterion

TaxID: 2320193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.82 45.0 3.20e-01 72.6% 20.9%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.74 66.0 5.36e-01 100.0% 68.1%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.69 44.0 3.79e-01 74.2% 40.8%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.68 43.0 3.62e-01 77.4% 38.5%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.68 48.0 3.75e-01 74.2% 38.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 58.0 5.28e-01 100.0% 80.5%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.67 47.0 3.59e-01 74.2% 33.8%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.66 57.0 5.46e-01 100.0% 86.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 3.90e-01 83.9% 51.9%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 42.0 3.33e-01 72.6% 46.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 41.0 3.35e-01 77.4% 39.4%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.59 41.0 3.72e-01 72.6% 67.1%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 3.51e-01 74.2% 71.7%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 33.0 3.99e-01 83.9% 100.0%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 42.0 3.53e-01 79.0% 78.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 3.75e-01 80.6% 64.5%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.88e-01 79.0% 64.4%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 39.0 3.29e-01 74.2% 43.8%
3gmiA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 46.0 3.18e-01 91.9% 60.7%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.55 27.0 3.20e-01 87.1% 65.0%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.55 44.0 3.12e-01 88.7% 84.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.72e-01 90.3% 67.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 40.0 3.23e-01 77.4% 91.5%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 40.0 2.96e-01 82.3% 77.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.66e-01 74.2% 70.8%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.54 32.0 3.58e-01 83.9% 85.4%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.34e-01 77.4% 48.9%
1quqB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.41e-01 83.9% 53.5%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 37.0 3.44e-01 85.5% 55.4%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 3.29e-01 83.9% 83.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 3.90e-01 91.9% 78.8%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 36.0 2.45e-01 74.2% 86.8%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.52 35.0 2.52e-01 72.6% 71.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 36.0 3.91e-01 72.6% 100.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.52 35.0 3.81e-01 72.6% 92.2%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.29e-01 79.0% 74.7%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.51 40.0 3.77e-01 100.0% 69.9%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 2.94e-01 82.3% 87.4%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.82e-01 93.5% 88.7%
2re3B03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 27.0 3.26e-01 100.0% 93.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 41.0 4.78e-01 98.4% 66.7%
4620896 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.73 64.0 4.89e-01 100.0% 67.6%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.71 60.0 5.12e-01 100.0% 71.8%
5047258 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 39.0 4.82e-01 77.4% 100.0%
322883 4.6.1.1 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.68 48.0 3.28e-01 74.2% 22.7%
3765582 386.1.1.289 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30903 0.68 37.0 3.36e-01 71.0% 40.0%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.68 58.0 4.98e-01 100.0% 73.3%
3960054 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.66 40.0 2.73e-01 83.9% 17.3%
4161357 375.14.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) 0.66 38.0 4.58e-01 72.6% 90.0%
4140141 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.65 38.0 4.53e-01 72.6% 90.0%
4014812 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.65 47.0 4.79e-01 93.5% 80.0%
3628251 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.63 38.0 4.52e-01 75.8% 92.5%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 39.0 3.97e-01 83.9% 65.0%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 47.0 4.64e-01 87.1% 98.5%
4956280 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.60 50.0 4.73e-01 91.9% 89.3%
3976533 3943.1.1.5 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N 0.59 39.0 3.33e-01 96.8% 42.0%
4027091 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.58 41.0 4.32e-01 79.0% 83.6%
3682061 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 28.0 3.54e-01 77.4% 83.3%
3939513 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 41.0 2.80e-01 100.0% 18.8%
4646065 102.8.1.0 ↗ alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain 0.58 47.0 3.14e-01 91.9% 51.5%
3505714 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 38.0 4.00e-01 100.0% 78.2%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 35.0 3.58e-01 91.9% 61.7%
3389055 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.57 43.0 4.11e-01 100.0% 69.3%
5041902 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.56 49.0 4.59e-01 95.2% 93.3%
3639147 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.56 50.0 3.18e-01 100.0% 33.1%
5077562 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.56 48.0 4.56e-01 95.2% 92.0%
3387924 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 3.76e-01 83.9% 78.9%
4953587 2005.1.1.126 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › HIGH_NTase1_ass 0.56 45.0 3.00e-01 91.9% 49.6%
3931230 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 37.0 3.74e-01 82.3% 67.7%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.53 37.0 3.65e-01 72.6% 70.8%
3538117 391.1.2.17 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC, VWC2L_2nd 0.53 35.0 2.78e-01 100.0% 34.4%
3506222 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.53 34.0 3.70e-01 100.0% 91.1%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.80e-01 82.3% 83.6%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.52 36.0 3.56e-01 75.8% 69.2%
3659103 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.52 36.0 3.89e-01 72.6% 94.0%
3742452 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 38.0 2.42e-01 77.4% 51.7%
2324048 1185.1.1.1 ↗ a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 0.52 40.0 3.19e-01 88.7% 92.0%
4929700 529.1.1.0 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) 0.52 41.0 3.74e-01 95.2% 64.4%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.12e-01 95.2% 91.4%
4017541 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.52 43.0 2.72e-01 100.0% 76.7%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 4.03e-01 96.8% 96.4%
4504019 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.80e-01 77.4% 81.7%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.51 35.0 3.70e-01 82.3% 83.6%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.51 35.0 3.56e-01 83.9% 75.0%
154312 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.51 38.0 3.72e-01 82.3% 80.0%
3938574 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.51 39.0 3.71e-01 95.2% 69.3%
3483225 375.3.1.0 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.51 42.0 3.81e-01 93.5% 75.3%