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NC_048064.1__YP_009812365.1__HOU19_gp02__00002

Bact-Vir

NC_048064.1__YP_009812365.1__HOU19_gp02__00002

Identity

Accession:
NC_048064 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Rodentiumvirus› Escherichia_phage_LL11

TaxID: 2315628

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-55
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.72 61.0 5.23e-01 96.3% 87.6%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 56.0 4.23e-01 100.0% 90.3%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 56.0 3.53e-01 100.0% 93.3%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.65 55.0 3.78e-01 96.3% 55.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 53.0 4.66e-01 90.7% 88.7%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.65 44.0 3.11e-01 79.6% 23.3%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 51.0 4.49e-01 90.7% 57.0%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 54.0 3.50e-01 100.0% 88.4%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.20e-01 92.6% 72.1%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 52.0 3.56e-01 98.1% 97.3%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.63 51.0 3.57e-01 94.4% 82.7%
2wjsA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 3.93e-01 100.0% 57.8%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 53.0 4.09e-01 100.0% 79.1%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.63 52.0 4.32e-01 96.3% 78.2%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 43.0 3.74e-01 75.9% 83.7%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.26e-01 100.0% 94.6%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.25e-01 100.0% 89.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.45e-01 96.3% 86.2%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.18e-01 96.3% 78.4%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.12e-01 98.1% 90.6%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 49.0 3.62e-01 94.4% 74.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.12e-01 98.1% 83.2%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 51.0 3.85e-01 100.0% 77.3%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.51e-01 100.0% 60.0%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.60 52.0 3.54e-01 100.0% 70.2%
2r16A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.57e-01 96.3% 73.7%
3lhxA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 45.0 2.86e-01 85.2% 35.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 52.0 4.95e-01 100.0% 100.0%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.98e-01 100.0% 87.1%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.58 46.0 3.79e-01 92.6% 72.3%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 45.0 4.40e-01 90.7% 81.0%
2kuqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.56e-01 98.1% 50.3%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 40.0 2.58e-01 72.2% 73.7%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.57 47.0 4.43e-01 94.4% 98.5%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 49.0 3.46e-01 100.0% 72.1%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.45e-01 75.9% 77.7%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.56 43.0 3.55e-01 92.6% 64.7%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.56 46.0 4.58e-01 96.3% 89.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 4.07e-01 96.3% 81.4%
2jv8A00 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.54 42.0 3.86e-01 87.0% 76.7%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.54 47.0 4.04e-01 100.0% 80.7%
2o3iA02 2.40.390.10 Mainly Beta › Beta Barrel › CV3147-like › CV3147-like 0.53 43.0 3.40e-01 98.1% 75.6%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.53 39.0 3.07e-01 77.8% 67.3%
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 47.0 3.88e-01 98.1% 98.9%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.10e-01 100.0% 55.1%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.96e-01 92.6% 46.4%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.51 38.0 3.65e-01 83.3% 86.4%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 34.0 3.22e-01 83.3% 53.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3418340 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.73 57.0 3.46e-01 85.2% 14.8%
3665510 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.73 57.0 3.45e-01 85.2% 14.8%
3991735 9.1.1.49 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.70 58.0 4.55e-01 92.6% 87.8%
3463325 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 60.0 3.88e-01 100.0% 21.6%
3220737 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.69 57.0 3.69e-01 98.1% 22.9%
3301602 5.1.2.41 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40_RFWD3 0.68 55.0 3.81e-01 88.9% 57.2%
3349450 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.68 53.0 4.20e-01 88.9% 65.0%
2841490 5.1.5.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR75_1st 0.67 52.0 4.02e-01 88.9% 56.1%
3524259 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.67 58.0 4.03e-01 100.0% 71.9%
5003239 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 51.0 3.27e-01 85.2% 26.4%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 57.0 3.72e-01 98.1% 22.0%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.66 49.0 4.08e-01 81.5% 100.0%
4003675 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.66 51.0 3.02e-01 87.0% 15.7%
4949942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.24e-01 83.3% 93.2%
3237575 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 57.0 3.60e-01 100.0% 19.3%
4664955 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.64 46.0 3.94e-01 75.9% 87.8%
3894967 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.64 55.0 3.83e-01 100.0% 72.4%
3939513 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.63 54.0 3.54e-01 100.0% 55.3%
5010861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 54.0 3.26e-01 98.1% 89.4%
3521604 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.63 54.0 3.76e-01 100.0% 67.7%
3501302 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.63 46.0 3.61e-01 77.8% 65.8%
3476810 5.1.4.175 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd 0.63 54.0 3.54e-01 100.0% 96.8%
4255188 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.62 44.0 3.82e-01 83.3% 46.7%
4260682 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 54.0 3.73e-01 100.0% 53.0%
3765454 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 52.0 3.99e-01 96.3% 82.3%
4200480 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.62 45.0 3.72e-01 77.8% 79.0%
3848155 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.61 52.0 3.60e-01 100.0% 70.5%
3408722 633.23.1.20 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Atthog 0.61 51.0 3.73e-01 100.0% 69.0%
4971724 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.61 45.0 2.77e-01 79.6% 20.3%
3512316 5.1.5.69 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nbas_N 0.61 51.0 3.19e-01 100.0% 94.7%
2641777 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.61 44.0 3.70e-01 75.9% 83.0%
3685044 633.23.1.12 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.61 52.0 3.39e-01 100.0% 69.2%
3545459 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.60 52.0 3.56e-01 100.0% 67.5%
4608520 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.60 49.0 2.73e-01 100.0% 49.2%
3194774 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 52.0 3.37e-01 100.0% 75.1%
4950190 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 47.0 3.56e-01 88.9% 92.6%
3981692 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.59 43.0 2.71e-01 77.8% 34.8%
4294910 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.59 44.0 4.40e-01 83.3% 83.6%
3412760 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.81e-01 96.3% 84.8%
5067782 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 45.0 4.12e-01 100.0% 65.7%
3982644 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 44.0 2.75e-01 87.0% 26.1%
3736099 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.56 44.0 2.68e-01 85.2% 29.7%
3209304 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.56 41.0 3.61e-01 79.6% 100.0%
2323829 3484.1.1.2 ↗ a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.56 43.0 3.27e-01 92.6% 47.8%
3947601 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 44.0 2.76e-01 87.0% 27.3%
3610629 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 47.0 3.33e-01 100.0% 77.4%
4944386 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.65e-01 98.1% 71.8%
4792845 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 39.0 2.66e-01 79.6% 74.5%
5011765 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.52 37.0 2.80e-01 75.9% 96.3%
3519816 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.52 44.0 2.91e-01 96.3% 92.9%
3958403 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.50 36.0 2.68e-01 77.8% 28.0%