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NC_048072.1__YP_009812945.1__HOU27_gp34__00034

Bact-Vir

NC_048072.1__YP_009812945.1__HOU27_gp34__00034

Identity

Accession:
NC_048072 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Raleighvirus› Streptomyces_phage_Darolandstone

TaxID: 2315716

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-124
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 48.0 4.29e-01 90.4% 67.5%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 3.10e-01 98.8% 35.5%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 3.43e-01 89.2% 51.2%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.54 37.0 3.14e-01 71.1% 81.8%
3tesA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.57e-01 91.6% 64.9%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.61e-01 91.6% 70.1%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.52e-01 90.4% 64.3%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 43.0 3.00e-01 95.2% 80.7%
6hq7B02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 41.0 2.98e-01 90.4% 94.6%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 36.0 3.27e-01 72.3% 98.2%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.59e-01 91.6% 70.5%
3hv8A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 41.0 2.98e-01 89.2% 95.5%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.50 41.0 2.99e-01 90.4% 96.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 32.0 3.44e-01 88.0% 79.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043699 3509.1.1.0 ↗ a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain 0.65 49.0 3.73e-01 79.5% 51.1%
3599634 4261.1.1.4 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › Slowpoke_C 0.64 34.0 3.16e-01 79.5% 41.3%
5032784 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 40.0 3.83e-01 89.2% 61.1%
3598149 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.58 40.0 3.28e-01 71.1% 79.1%
3430645 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.56 42.0 2.94e-01 81.9% 99.0%
3700233 2485.1.1.45 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.56 47.0 3.79e-01 95.2% 77.6%
3972453 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.55 48.0 3.38e-01 98.8% 91.0%
4440911 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 40.0 2.74e-01 78.3% 70.8%
3544903 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.54 46.0 2.91e-01 91.6% 78.1%
3573692 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 35.0 3.18e-01 79.5% 46.2%
4939098 11.14.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.53 44.0 4.11e-01 94.0% 74.7%
370101 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.53 43.0 3.04e-01 89.2% 90.4%
4206079 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.52 42.0 3.09e-01 89.2% 100.0%
3509065 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.52 38.0 3.77e-01 95.2% 74.1%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.95e-01 94.0% 83.8%
3716385 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.02e-01 71.1% 92.1%
3490255 11.1.4.114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.51 39.0 3.73e-01 96.4% 69.0%
3599920 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 33.0 3.29e-01 79.5% 63.5%
3535708 2485.1.1.45 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.51 42.0 3.48e-01 95.2% 85.0%
3734626 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.51 40.0 3.01e-01 88.0% 79.5%
5031069 327.3.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C 0.51 40.0 3.11e-01 88.0% 85.1%