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NC_048077.1__YP_009813480.1__HOU32_gp035__00035

Bact-Vir

NC_048077.1__YP_009813480.1__HOU32_gp035__00035

Identity

Accession:
NC_048077 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmondvirus› Dickeya_phage_vB_DsoM_JA11

TaxID: 2382310

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-38
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.89 78.0 5.48e-01 100.0% 32.8%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 74.0 5.64e-01 100.0% 43.3%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.85 73.0 5.43e-01 100.0% 39.2%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 70.0 6.48e-01 100.0% 72.5%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.81 63.0 5.70e-01 89.5% 63.6%
4fvmA07 1.20.1280.310 Mainly Alpha › Up-down Bundle › Monooxygenase › B family DNA polymerase, thumb domain, four helix bundle 0.80 65.0 5.64e-01 100.0% 63.1%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.79 64.0 4.72e-01 100.0% 33.3%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.78 64.0 5.15e-01 100.0% 46.8%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.78 63.0 5.11e-01 100.0% 47.6%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.77 66.0 4.81e-01 100.0% 34.2%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.76 63.0 4.50e-01 100.0% 31.2%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.76 64.0 5.12e-01 100.0% 47.5%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.75 58.0 5.29e-01 94.7% 63.6%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.74 59.0 4.36e-01 94.7% 34.9%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.73 51.0 4.46e-01 76.3% 51.7%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.73 59.0 4.28e-01 100.0% 31.5%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.72 54.0 5.00e-01 100.0% 62.3%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.72 62.0 4.08e-01 97.4% 71.4%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.71 58.0 4.63e-01 97.4% 43.0%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 59.0 3.36e-01 100.0% 12.5%
2lqxA00 6.10.250.1700 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 52.0 5.17e-01 97.4% 87.8%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 58.0 3.66e-01 100.0% 30.7%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.66 54.0 4.38e-01 100.0% 46.2%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 50.0 4.60e-01 100.0% 72.6%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 51.0 3.23e-01 100.0% 95.3%
1fp1D02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 53.0 3.27e-01 100.0% 36.6%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 53.0 3.35e-01 100.0% 74.3%
4mloA02 1.10.10.1310 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ToxT, HTH1 motif 0.54 41.0 3.87e-01 84.2% 74.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580786 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.93 81.0 6.37e-01 97.4% 49.3%
4936541 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.91 80.0 6.10e-01 100.0% 44.7%
3230196 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.90 78.0 5.44e-01 100.0% 31.7%
4033261 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.90 78.0 5.35e-01 100.0% 29.5%
3751351 3796.1.1.0 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain 0.89 77.0 6.48e-01 100.0% 58.5%
3739517 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 72.0 4.45e-01 92.1% 16.7%
3790478 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.87 75.0 4.43e-01 100.0% 13.1%
3797030 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.86 75.0 4.61e-01 100.0% 17.3%
4044098 3352.1.1.1 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.85 73.0 4.06e-01 100.0% 20.2%
3689259 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.80 67.0 3.91e-01 94.7% 11.7%
3257429 3352.1.1.22 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › TMEM260-like 0.80 68.0 3.85e-01 100.0% 25.8%
3398414 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.80 66.0 6.35e-01 100.0% 82.2%
4497642 150.1.2.20 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Rubrerythrin 0.79 65.0 3.83e-01 100.0% 12.2%
5031036 3979.1.1.0 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.78 64.0 4.59e-01 92.1% 31.8%
4956934 1045.1.1.0 ↗ alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.77 63.0 5.79e-01 94.7% 70.0%
2630625 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.76 63.0 4.33e-01 100.0% 26.7%
5057836 207.9.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.76 62.0 4.10e-01 100.0% 21.1%
55264 604.14.1.1 ↗ alpha bundles › Spectrin repeat-like › PPK N-terminal domain-like › PPK N-terminal domain-like › PP_kinase_N 0.75 61.0 5.84e-01 100.0% 80.9%
3988714 5069.1.3.25 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF3021 0.74 59.0 4.43e-01 100.0% 36.4%
3179197 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 57.0 5.83e-01 86.8% 97.1%
4024235 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.73 61.0 3.65e-01 100.0% 13.6%
3934503 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.63 52.0 4.87e-01 100.0% 76.0%
3361122 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 49.0 4.71e-01 92.1% 77.8%
D2 medium residues 45-86
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.83 41.0 3.00e-01 78.6% 20.8%
3hg9A01 3.30.1300.90 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › PilM protein, N-terminal domain 0.81 41.0 3.23e-01 78.6% 26.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 64.0 5.29e-01 92.9% 73.7%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.74 62.0 4.45e-01 100.0% 50.0%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 3.87e-01 100.0% 34.5%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.71 61.0 4.61e-01 100.0% 52.8%
3aiiA03 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.69 48.0 3.75e-01 73.8% 36.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 60.0 4.28e-01 100.0% 37.1%
1nnhA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 51.0 3.01e-01 83.3% 22.2%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.64 38.0 2.38e-01 81.0% 10.6%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 3.94e-01 100.0% 42.4%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 51.0 3.22e-01 92.9% 58.6%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.62 48.0 3.09e-01 85.7% 64.8%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.61 45.0 4.05e-01 100.0% 52.7%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 46.0 3.18e-01 92.9% 72.4%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.60 44.0 2.93e-01 83.3% 18.8%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.58 45.0 4.76e-01 92.9% 100.0%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 3.74e-01 88.1% 50.0%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 51.0 3.95e-01 100.0% 47.9%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.58 39.0 3.53e-01 73.8% 59.4%
7f0uA01 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.58 40.0 3.12e-01 73.8% 33.7%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 43.0 3.09e-01 92.9% 44.2%
2a90A02 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 37.0 3.25e-01 97.6% 45.9%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 2.82e-01 100.0% 13.8%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 47.0 3.74e-01 100.0% 74.7%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 2.95e-01 85.7% 87.1%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 2.99e-01 97.6% 17.3%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 44.0 2.65e-01 95.2% 38.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 3.24e-01 81.0% 44.1%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 38.0 3.04e-01 85.7% 90.6%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.53 46.0 3.32e-01 100.0% 43.7%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.53 44.0 3.41e-01 100.0% 89.1%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 46.0 3.24e-01 100.0% 46.6%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 36.0 3.20e-01 76.2% 58.3%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.52 42.0 2.69e-01 95.2% 90.6%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.50e-01 85.7% 63.5%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.51 42.0 3.90e-01 100.0% 79.3%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.42e-01 100.0% 94.5%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.51 38.0 3.25e-01 100.0% 49.5%
1e8cA01 3.40.1390.10 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain 0.50 40.0 3.20e-01 100.0% 64.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078006 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.83 64.0 5.32e-01 83.3% 91.4%
3962875 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.79 68.0 4.84e-01 100.0% 49.2%
3389782 3470.1.1.53 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › CytochromB561_N 0.74 62.0 3.94e-01 100.0% 21.0%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.74 65.0 6.38e-01 100.0% 97.8%
990993 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 46.0 4.42e-01 71.4% 59.2%
4669982 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 47.0 4.56e-01 76.2% 62.0%
4499042 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.69 49.0 3.94e-01 100.0% 40.0%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 58.0 4.80e-01 100.0% 53.3%
3912099 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 58.0 4.37e-01 100.0% 39.0%
3840270 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 58.0 4.22e-01 100.0% 34.2%
3959171 4029.1.1.0 ↗ a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like 0.67 52.0 5.37e-01 85.7% 97.5%
4001872 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.67 55.0 3.64e-01 100.0% 21.6%
4936221 2003.1.7.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › NAD_kinase_C 0.66 52.0 3.69e-01 100.0% 34.4%
4116186 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.65 45.0 2.89e-01 100.0% 16.3%
3366458 109.4.1.3005 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase 0.63 47.0 2.73e-01 81.0% 19.1%
4948574 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 53.0 3.10e-01 100.0% 30.3%
3233815 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 49.0 3.14e-01 97.6% 23.6%
3223155 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 50.0 3.16e-01 97.6% 22.4%
5011378 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 48.0 4.27e-01 97.6% 98.6%
3581945 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.61 50.0 4.47e-01 100.0% 65.0%
4977157 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 41.0 4.10e-01 76.2% 66.7%
5004274 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 40.0 3.41e-01 73.8% 40.0%
3960493 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.60 45.0 3.23e-01 85.7% 28.0%
4959095 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 39.0 4.04e-01 73.8% 70.0%
4353619 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.59 50.0 3.85e-01 97.6% 99.0%
4026701 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.59 51.0 3.29e-01 100.0% 39.0%
3245311 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 46.0 3.71e-01 100.0% 41.0%
4984442 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 47.0 3.13e-01 100.0% 21.7%
4995731 502.1.1.0 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain 0.58 50.0 4.44e-01 97.6% 100.0%
3922598 4120.1.1.43 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › TSTD2_N 0.58 43.0 3.87e-01 100.0% 55.4%
4937431 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 47.0 3.27e-01 100.0% 54.5%
5015831 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.57 44.0 3.16e-01 88.1% 41.5%
3936608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.47e-01 100.0% 40.0%
3057652 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.57 47.0 2.76e-01 100.0% 24.3%
5078978 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 45.0 2.85e-01 100.0% 30.9%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.56 45.0 3.49e-01 95.2% 92.4%
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.32e-01 92.9% 82.0%
3618014 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.56 39.0 3.92e-01 81.0% 71.1%
4454944 101.1.2.468 ↗ alpha arrays › HTH › HTH › winged helix domain › McbB 0.55 44.0 3.77e-01 100.0% 88.7%
185084 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.55 39.0 3.68e-01 90.5% 57.6%
4034055 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 47.0 2.81e-01 97.6% 17.0%
5077887 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.55 43.0 2.74e-01 88.1% 97.7%
4297114 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.54 39.0 2.80e-01 83.3% 36.1%
3590812 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 39.0 3.70e-01 88.1% 63.3%
1280955 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 39.0 3.60e-01 83.3% 59.0%
4928223 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 43.0 3.61e-01 100.0% 97.6%
4946645 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.53 41.0 2.82e-01 88.1% 58.9%
3231890 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.53 38.0 3.77e-01 78.6% 79.5%
4980642 4961.1.1.0 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit 0.52 36.0 3.30e-01 85.7% 52.0%
3619623 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.52 37.0 3.32e-01 76.2% 66.2%
5000498 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.52 41.0 3.81e-01 97.6% 68.3%
5017616 243.6.1.5 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › UPF0113_N 0.51 36.0 3.02e-01 88.1% 64.2%
4990890 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 40.0 2.87e-01 100.0% 80.5%