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NC_048077.1__YP_009813564.1__HOU32_gp119__00119
Bact-VirNC_048077.1__YP_009813564.1__HOU32_gp119__00119
Identity
- Accession:
- NC_048077 ↗
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Taxonomy
TaxID: 2382310
Cluster
View cluster (40 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.54 | 30.0 | 3.19e-01 | 100.0% | 60.3% |
| 1le8A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 33.0 | 3.76e-01 | 72.4% | 86.8% |
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 43.0 | 3.26e-01 | 100.0% | 84.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3456656 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.62 | 36.0 | 3.88e-01 | 100.0% | 67.7% |
| 3588137 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 36.0 | 4.05e-01 | 96.1% | 89.1% |
| 4977454 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.52 | 36.0 | 3.07e-01 | 75.0% | 68.6% |
D2
medium
residues 83-132_199-225
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.64 | 43.0 | 4.93e-01 | 98.7% | 96.4% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.53 | 37.0 | 2.71e-01 | 100.0% | 26.5% |
| 1wfjA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 45.0 | 3.89e-01 | 100.0% | 98.4% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 26.0 | 2.91e-01 | 94.8% | 56.1% |
| 2fiyA00 | 3.90.1670.10 | Alpha Beta › Alpha-Beta Complex › FdhE-like fold › FdhE-like domain | 0.51 | 41.0 | 2.83e-01 | 90.9% | 51.9% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.50 | 28.0 | 3.07e-01 | 98.7% | 64.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3307036 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.71 | 41.0 | 5.02e-01 | 90.9% | 90.0% |
| 3231111 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.59 | 35.0 | 3.46e-01 | 92.2% | 52.9% |
| 3892822 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.58 | 35.0 | 3.59e-01 | 90.9% | 61.3% |
| 3274047 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.56 | 35.0 | 3.26e-01 | 100.0% | 48.0% |
| 3466041 | 2006.1.4.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › UVB_sens_C | 0.55 | 31.0 | 2.54e-01 | 90.9% | 27.1% |
| 3408588 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.55 | 33.0 | 3.44e-01 | 92.2% | 65.7% |
| 4957379 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.97e-01 | 87.0% | 84.0% |
| 3906778 | 11.2.1.73 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29378 | 0.52 | 44.0 | 3.47e-01 | 98.7% | 85.7% |
| 5059725 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.52 | 35.0 | 2.76e-01 | 100.0% | 31.1% |
| 4937923 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.95e-01 | 93.5% | 84.2% |
D3
medium
residues 147-195
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o7iA00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.62 | 48.0 | 3.50e-01 | 89.8% | 40.0% |
| 2w45A01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.61 | 51.0 | 4.00e-01 | 100.0% | 79.3% |
| 7fsfA02 | 3.30.56.80 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.57 | 40.0 | 3.73e-01 | 79.6% | 72.5% |