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NC_048077.1__YP_009813616.1__HOU32_gp171__00171

Bact-Vir

NC_048077.1__YP_009813616.1__HOU32_gp171__00171

Identity

Accession:
NC_048077 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmondvirus› Dickeya_phage_vB_DsoM_JA11

TaxID: 2382310

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-163
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 34.0 4.18e-01 75.9% 85.9%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 28.0 3.29e-01 95.0% 69.6%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 38.0 3.24e-01 70.9% 77.7%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.54 40.0 4.27e-01 95.7% 90.8%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 22.0 3.15e-01 74.5% 86.2%
2mzqA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 28.0 3.23e-01 74.5% 73.3%
7uwjC02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.51 30.0 3.57e-01 80.1% 85.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4413772 325.1.6.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase 0.57 48.0 3.87e-01 90.1% 67.4%
3884573 11.1.1.318 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N 0.53 32.0 3.86e-01 78.0% 93.3%
3302829 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.52 24.0 3.43e-01 90.8% 95.4%
3264808 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.51 25.0 3.35e-01 92.9% 91.4%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.51 24.0 3.41e-01 91.5% 96.9%
3754192 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.51 44.0 2.94e-01 94.3% 60.7%
4279262 10.12.1.25 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.50 40.0 3.28e-01 84.4% 94.2%
D2 high residues 178-360
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 27.0 3.59e-01 70.5% 65.0%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.64 29.0 3.28e-01 80.3% 53.2%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.63 33.0 4.03e-01 73.2% 77.8%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 25.0 3.26e-01 72.1% 65.4%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.57 30.0 3.31e-01 71.6% 60.8%
2hs5A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.56 36.0 4.02e-01 73.2% 82.1%
1bbhA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.55 34.0 3.98e-01 74.9% 87.0%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.53 26.0 3.69e-01 70.5% 100.0%
1eq1A00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.53 31.0 3.29e-01 71.6% 63.3%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.52 33.0 3.67e-01 71.6% 80.6%
1w36B04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.51 28.0 3.14e-01 72.7% 63.7%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.51 24.0 3.33e-01 72.1% 90.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3488340 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.55 32.0 3.98e-01 73.2% 91.3%
3819922 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.54 33.0 3.75e-01 86.3% 77.2%
3248199 601.30.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.50 32.0 3.52e-01 84.7% 76.1%