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NC_048077.1__YP_009813685.1__HOU32_gp240__00240
Bact-VirNC_048077.1__YP_009813685.1__HOU32_gp240__00240
Identity
- Accession:
- NC_048077 ↗
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Taxonomy
TaxID: 2382310
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-88
Domain cluster:
rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00368__D2-60
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.62 | 54.0 | 4.26e-01 | 97.3% | 67.5% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 49.0 | 4.52e-01 | 100.0% | 69.5% |
| 1d1jB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.60 | 51.0 | 4.18e-01 | 94.6% | 81.6% |
| 3besR01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 3.94e-01 | 100.0% | 63.9% |
| 3hlzB01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 51.0 | 4.18e-01 | 98.6% | 62.9% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.58 | 51.0 | 3.79e-01 | 98.6% | 61.3% |
| 3udfA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 46.0 | 3.01e-01 | 90.5% | 69.3% |
| 1e50B00 | 2.40.250.10 | Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit | 0.58 | 48.0 | 4.03e-01 | 93.2% | 86.2% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 49.0 | 4.07e-01 | 100.0% | 70.8% |
| 2jmuA01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 47.0 | 3.37e-01 | 89.2% | 73.2% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 44.0 | 3.19e-01 | 89.2% | 88.9% |
| 7cu8E01 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.56 | 51.0 | 3.79e-01 | 100.0% | 59.3% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 4.19e-01 | 98.6% | 62.9% |
| 2oayA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 45.0 | 3.41e-01 | 89.2% | 78.3% |
| 4cgyA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.55 | 43.0 | 3.58e-01 | 83.8% | 53.9% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.55 | 48.0 | 3.91e-01 | 100.0% | 91.8% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 43.0 | 3.71e-01 | 86.5% | 74.2% |
| 5axgA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 48.0 | 4.04e-01 | 98.6% | 81.7% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 43.0 | 3.56e-01 | 89.2% | 98.6% |
| 2pn5A10 | 2.60.40.690 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain | 0.54 | 48.0 | 3.83e-01 | 100.0% | 64.4% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 45.0 | 2.89e-01 | 100.0% | 75.9% |
| 3l81A02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.53 | 47.0 | 4.15e-01 | 100.0% | 79.1% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 44.0 | 2.82e-01 | 100.0% | 75.9% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 42.0 | 3.07e-01 | 93.2% | 89.1% |
| 3oc4B03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 43.0 | 3.67e-01 | 95.9% | 55.4% |
| 3sl2A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 45.0 | 3.70e-01 | 100.0% | 60.0% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.52 | 46.0 | 3.03e-01 | 100.0% | 86.8% |
| 1f98A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 42.0 | 3.58e-01 | 90.5% | 81.6% |
| 1pqzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 4.10e-01 | 100.0% | 73.3% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 45.0 | 3.10e-01 | 100.0% | 85.4% |
| 5jciA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 35.0 | 3.32e-01 | 91.9% | 59.6% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 39.0 | 3.61e-01 | 83.8% | 92.8% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.50 | 43.0 | 3.41e-01 | 100.0% | 91.2% |
| 6bs6B01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 43.0 | 4.00e-01 | 100.0% | 75.0% |
| 5brqA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 44.0 | 4.25e-01 | 97.3% | 86.4% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 39.0 | 3.63e-01 | 85.1% | 92.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3514856 | 1181.1.1.0 ↗ | 0.79 | 50.0 | 5.02e-01 | 89.2% | 64.0% | |
| 3515029 | 223.2.1.46 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M | 0.64 | 54.0 | 4.22e-01 | 90.5% | 56.0% |
| 3700841 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 55.0 | 3.92e-01 | 93.2% | 46.7% |
| 3606302 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 54.0 | 3.96e-01 | 93.2% | 52.3% |
| 4941093 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 56.0 | 4.47e-01 | 98.6% | 70.0% |
| 5038780 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.63 | 49.0 | 3.04e-01 | 89.2% | 14.5% |
| 3805100 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.63 | 55.0 | 4.12e-01 | 98.6% | 60.1% |
| 4226251 | 375.1.1.252 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27302 | 0.62 | 39.0 | 4.30e-01 | 81.1% | 78.3% |
| 4950580 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.62 | 50.0 | 4.11e-01 | 87.8% | 76.3% |
| 5028155 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.62 | 55.0 | 4.29e-01 | 98.6% | 66.5% |
| 3278991 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 53.0 | 4.17e-01 | 100.0% | 54.5% |
| None | — | 0.61 | 54.0 | 3.48e-01 | 97.3% | 30.6% | |
| 3236743 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.60 | 53.0 | 3.91e-01 | 98.6% | 39.4% |
| 3955095 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.60 | 53.0 | 3.90e-01 | 98.6% | 71.4% |
| 4882206 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.60 | 50.0 | 4.28e-01 | 91.9% | 76.0% |
| 5018913 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.60 | 50.0 | 4.23e-01 | 90.5% | 87.5% |
| 4953666 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.60 | 52.0 | 4.20e-01 | 98.6% | 70.3% |
| 4960081 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.60 | 50.0 | 4.55e-01 | 91.9% | 97.0% |
| 4984586 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.59 | 46.0 | 4.04e-01 | 83.8% | 76.4% |
| 1286181 | 881.1.1.7 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 | 0.59 | 51.0 | 4.22e-01 | 98.6% | 64.7% |
| 3705153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 49.0 | 3.96e-01 | 90.5% | 69.6% |
| 5009552 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.58 | 47.0 | 3.59e-01 | 89.2% | 71.8% |
| 4958861 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.57 | 48.0 | 4.08e-01 | 91.9% | 80.8% |
| 3629860 | 223.2.1.43 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_M | 0.57 | 46.0 | 3.63e-01 | 90.5% | 64.2% |
| 5019514 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.56 | 49.0 | 4.01e-01 | 100.0% | 65.5% |
| 3392216 | 223.2.1.31 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 | 0.56 | 48.0 | 3.67e-01 | 100.0% | 64.7% |
| 3283393 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.55 | 45.0 | 2.94e-01 | 95.9% | 84.6% |
| 5048830 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 45.0 | 3.85e-01 | 93.2% | 71.2% |
| 5039819 | 220.5.1.1 ↗ | beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N | 0.54 | 44.0 | 3.59e-01 | 86.5% | 62.3% |
| 5047435 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 43.0 | 3.57e-01 | 90.5% | 66.7% |
| 3344476 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.54 | 47.0 | 3.89e-01 | 100.0% | 76.3% |
| 3914585 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 44.0 | 3.85e-01 | 86.5% | 73.3% |
| 4405873 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.53 | 44.0 | 3.89e-01 | 94.6% | 77.4% |
| 4547088 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 37.0 | 3.32e-01 | 89.2% | 50.0% |
| 3291389 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 47.0 | 3.72e-01 | 98.6% | 58.1% |
| 3460166 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.92e-01 | 97.3% | 85.2% |
| 3569095 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.53 | 48.0 | 4.00e-01 | 100.0% | 69.6% |
| 5033471 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.52 | 44.0 | 4.03e-01 | 97.3% | 85.7% |
| 5038531 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.52 | 40.0 | 4.22e-01 | 83.8% | 100.0% |
| 4960002 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 33.0 | 3.08e-01 | 89.2% | 52.2% |
| 4003150 | 1116.1.1.1 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom | 0.51 | 40.0 | 3.22e-01 | 90.5% | 95.2% |
| 1713377 | 12.1.1.21 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 | 0.51 | 44.0 | 3.75e-01 | 100.0% | 87.4% |
| 3781119 | 5.1.4.97 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop | 0.51 | 42.0 | 2.68e-01 | 97.3% | 89.4% |
| 3974655 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.50 | 42.0 | 3.40e-01 | 91.9% | 58.6% |