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NC_048077.1__YP_009813722.1__HOU32_gp277__00277

Bact-Vir

NC_048077.1__YP_009813722.1__HOU32_gp277__00277

Identity

Accession:
NC_048077 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmondvirus› Dickeya_phage_vB_DsoM_JA11

TaxID: 2382310

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-151
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 41.0 3.81e-01 72.0% 98.8%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.58 39.0 4.54e-01 70.4% 97.8%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.57 40.0 3.92e-01 72.0% 94.2%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.56 37.0 4.13e-01 90.4% 85.6%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 35.0 3.72e-01 87.2% 71.0%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.55 33.0 3.82e-01 72.8% 79.8%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.11e-01 88.8% 46.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 40.0 4.22e-01 74.4% 92.7%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 37.0 3.05e-01 72.8% 92.4%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 44.0 3.87e-01 89.6% 68.2%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.76e-01 75.2% 39.6%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.93e-01 72.0% 91.2%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.69e-01 75.2% 44.8%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 46.0 4.14e-01 100.0% 91.3%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.51 25.0 3.13e-01 77.6% 81.8%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 40.0 3.08e-01 87.2% 54.0%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 42.0 3.45e-01 90.4% 97.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4193772 331.1.1.13 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.60 37.0 4.41e-01 74.4% 91.8%
5023929 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 33.0 3.87e-01 92.0% 82.4%
3547884 389.1.2.7 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › THBD 0.57 31.0 4.03e-01 75.2% 95.7%
5001509 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.56 24.0 3.27e-01 93.6% 78.3%
3217981 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.56 33.0 2.94e-01 91.2% 42.9%
3273263 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 40.0 2.78e-01 74.4% 29.2%
4456367 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 38.0 3.88e-01 71.2% 77.6%
4203120 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.54 42.0 2.87e-01 81.6% 36.4%
3572892 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.54 41.0 2.81e-01 81.6% 41.9%
3715739 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.54 40.0 2.73e-01 78.4% 23.4%
1875530 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.53 41.0 3.35e-01 82.4% 85.3%
3252404 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.52 35.0 3.97e-01 70.4% 94.7%
4398068 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.52 37.0 2.70e-01 74.4% 47.9%
3325416 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 39.0 2.84e-01 81.6% 81.9%
4987228 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 37.0 3.43e-01 76.8% 66.9%
5041236 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.50 22.0 3.30e-01 78.4% 94.5%