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NC_048077.1__YP_009813728.1__HOU32_gp283__00283

Bact-Vir

NC_048077.1__YP_009813728.1__HOU32_gp283__00283

Identity

Accession:
NC_048077 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmondvirus› Dickeya_phage_vB_DsoM_JA11

TaxID: 2382310

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-169
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 45.6 6.50e-12 94.7% 90.6%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.95 92.0 7.77e-01 100.0% 97.0%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.94 91.0 7.49e-01 100.0% 89.1%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.94 90.0 7.59e-01 100.0% 83.2%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.92 89.0 7.73e-01 100.0% 87.3%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.88 83.0 6.91e-01 100.0% 98.9%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.87 83.0 7.17e-01 99.1% 88.8%
7k5cB01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 78.0 6.86e-01 97.3% 83.0%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.84 76.0 6.65e-01 96.5% 87.5%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 78.0 6.50e-01 100.0% 70.8%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 63.0 6.23e-01 100.0% 90.7%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 64.0 6.06e-01 100.0% 86.2%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 63.0 5.85e-01 100.0% 83.7%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 50.0 5.11e-01 94.7% 80.6%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 53.0 4.84e-01 86.7% 95.5%
3afgA02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.58 46.0 3.40e-01 85.8% 99.0%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.56 46.0 3.20e-01 88.5% 95.3%
2b2hA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.56 45.0 3.14e-01 87.6% 90.3%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 32.0 3.94e-01 86.7% 97.0%
4yn3A01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.55 48.0 3.42e-01 97.3% 91.5%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.54 43.0 3.76e-01 100.0% 54.8%
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.53 43.0 3.80e-01 87.6% 72.2%
6ln0A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.51 36.0 3.70e-01 82.3% 77.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4530587 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.96 93.0 7.60e-01 100.0% 88.1%
3166094 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.95 92.0 7.65e-01 100.0% 93.1%
4515466 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.95 91.0 7.56e-01 100.0% 90.6%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.94 90.0 7.63e-01 100.0% 84.7%
4258903 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.94 85.0 7.26e-01 93.8% 92.1%
3965879 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.92 89.0 7.61e-01 100.0% 83.6%
3945171 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.92 88.0 7.97e-01 100.0% 84.8%
2393514 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.92 88.0 7.19e-01 100.0% 85.8%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.91 87.0 7.40e-01 100.0% 88.2%
4864324 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.91 68.0 6.36e-01 77.9% 84.6%
5028353 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.90 87.0 7.18e-01 100.0% 86.7%
4431057 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 85.0 7.73e-01 100.0% 89.7%
3947025 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.89 85.0 7.28e-01 100.0% 88.1%
3969917 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 84.0 6.78e-01 100.0% 69.5%
3385979 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 84.0 6.90e-01 100.0% 73.7%
3947473 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 85.0 7.58e-01 100.0% 83.3%
3970721 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.89 84.0 7.11e-01 100.0% 81.1%
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 83.0 7.14e-01 100.0% 67.1%
4010532 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.89 84.0 7.93e-01 99.1% 99.2%
3978377 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.88 84.0 6.82e-01 100.0% 81.5%
3985073 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 84.0 7.86e-01 100.0% 91.1%
3942480 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 84.0 7.37e-01 99.1% 96.1%
3966284 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.88 84.0 6.25e-01 100.0% 68.8%
4164050 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 84.0 6.66e-01 100.0% 77.6%
1175858 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 83.0 6.81e-01 100.0% 95.2%
3657952 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.88 83.0 6.69e-01 100.0% 73.5%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.87 83.0 6.91e-01 100.0% 83.3%
3839391 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.87 83.0 7.29e-01 100.0% 84.5%
4205221 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.86 83.0 7.18e-01 100.0% 96.2%
3945340 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 77.0 6.91e-01 94.7% 99.3%
3978932 235.1.1.35 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › DUF1615 0.85 80.0 6.47e-01 100.0% 87.4%
3692876 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.85 81.0 6.73e-01 100.0% 78.3%
4009649 632.3.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1615 0.84 79.0 6.95e-01 100.0% 81.1%
3205219 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.83 79.0 6.70e-01 99.1% 75.9%
3884688 235.1.1.31 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 0.83 78.0 6.61e-01 100.0% 74.9%
3720940 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.83 79.0 6.67e-01 100.0% 73.7%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 74.0 7.04e-01 95.6% 91.5%
3966371 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.77 72.0 5.14e-01 100.0% 74.3%
5029852 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.76 71.0 6.24e-01 100.0% 77.5%
3968994 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.74 69.0 6.14e-01 100.0% 95.5%
3728943 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.71 68.0 5.77e-01 100.0% 69.4%
3279121 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.70 55.0 5.93e-01 92.9% 97.9%
3877052 235.1.1.31 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 0.67 63.0 5.39e-01 100.0% 72.4%
3670672 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 34.0 3.72e-01 83.2% 77.8%
3371349 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.53 43.0 3.66e-01 87.6% 71.9%
3750756 101.1.4.70 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pecanex_C 0.53 43.0 3.44e-01 89.4% 63.0%