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NC_048077.1__YP_009813756.1__HOU32_gp311__00311
Bact-VirNC_048077.1__YP_009813756.1__HOU32_gp311__00311
Identity
- Accession:
- NC_048077 ↗
- Kingdom:
- phage
Quality
65.6
mean pLDDT
Taxonomy
TaxID: 2382310
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-123
Domain cluster:
rep: S2_009_000_R2_scaffold_143_prodigal-single.1__X__X__00160__D69-121
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 58.0 | 4.45e-01 | 92.7% | 72.7% |
| 6z74C02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.60 | 48.0 | 3.58e-01 | 94.5% | 51.6% |
| 3pyfA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.57 | 41.0 | 3.08e-01 | 81.8% | 83.6% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.57 | 39.0 | 3.71e-01 | 81.8% | 59.7% |
| 3tdoA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.53 | 39.0 | 2.64e-01 | 83.6% | 82.5% |
| 3gd6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 41.0 | 2.81e-01 | 87.3% | 29.6% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.53 | 43.0 | 3.13e-01 | 89.1% | 64.4% |
| 4qlxB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 44.0 | 3.00e-01 | 94.5% | 44.3% |
| 3sqnA02 | 1.10.1790.40 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.51 | 42.0 | 3.30e-01 | 92.7% | 63.6% |
| 7crnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 43.0 | 2.86e-01 | 100.0% | 54.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3176372 | 3949.1.1.3 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › SLS1_N | 0.73 | 65.0 | 5.94e-01 | 96.4% | 92.9% |
| 3165359 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.65 | 58.0 | 4.73e-01 | 100.0% | 55.0% |
| 3810859 | 170.1.1.15 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Retrotran_gag_2 | 0.60 | 52.0 | 4.39e-01 | 100.0% | 77.9% |
| 3525446 | 109.4.1.866 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Consortin_N | 0.58 | 40.0 | 3.33e-01 | 72.7% | 54.0% |
| 3268175 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.58 | 46.0 | 4.18e-01 | 87.3% | 100.0% |
| 3265998 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 45.0 | 3.04e-01 | 85.5% | 32.7% |
| 3997796 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.55 | 45.0 | 3.87e-01 | 100.0% | 76.0% |
| 3967002 | 3843.1.1.27 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › COX4_pro | 0.52 | 38.0 | 3.37e-01 | 80.0% | 80.0% |