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NC_048085.1__YP_009814452.1__HOU40_gp065__00065

Bact-Vir

NC_048085.1__YP_009814452.1__HOU40_gp065__00065

Identity

Accession:
NC_048085 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Harbinvirus› Lactobacillus_phage_Bromius

TaxID: 2315485

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-127
PDB
Domain cluster: rep: AY682195.1__AAV35876.1__orf56__00056__D75-123
D2 high residues 133-188
PDB
Domain cluster: rep: OP310984.1__UXD83619.1__NP274_00212__00212__D3-72
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 6.42e-01 100.0% 79.4%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.72 43.0 3.14e-01 96.4% 21.9%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 43.0 3.44e-01 96.4% 29.8%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 43.0 3.28e-01 96.4% 26.6%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 43.0 3.38e-01 96.4% 28.6%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.70 59.0 5.75e-01 96.4% 91.9%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.68 56.0 5.57e-01 96.4% 89.7%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 42.0 3.52e-01 96.4% 37.9%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 53.0 3.81e-01 92.9% 75.3%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 43.0 4.10e-01 98.2% 64.6%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 45.0 2.81e-01 98.2% 14.0%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 41.0 2.63e-01 82.1% 15.4%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.13e-01 85.7% 73.2%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.31e-01 85.7% 80.3%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.84e-01 85.7% 61.0%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.26e-01 85.7% 37.7%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.13e-01 87.5% 73.9%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.54 37.0 3.46e-01 71.4% 80.3%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 45.0 3.53e-01 94.6% 95.9%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 46.0 3.78e-01 96.4% 63.7%
4apmA03 2.60.40.4360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 34.0 3.39e-01 100.0% 61.4%
3ttcA01 3.90.870.30 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.53 43.0 3.10e-01 100.0% 87.8%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.53 46.0 3.96e-01 96.4% 75.9%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.28e-01 87.5% 50.5%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 42.0 3.61e-01 91.1% 96.7%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.51 43.0 3.15e-01 100.0% 33.8%
3p2mA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.40e-01 78.6% 75.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3058113 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.82 67.0 6.95e-01 100.0% 96.2%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.80 74.0 6.32e-01 100.0% 65.9%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.79 68.0 6.39e-01 100.0% 78.3%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.75 67.0 6.24e-01 100.0% 84.1%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.73 58.0 6.03e-01 87.5% 96.0%
3407580 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.73 48.0 4.44e-01 96.4% 54.3%
5017308 4012.1.1.5 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › DUF515 0.69 47.0 4.61e-01 96.4% 66.7%
3725302 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.68 42.0 3.41e-01 85.7% 31.8%
5033944 101.1.2.892 ↗ alpha arrays › HTH › HTH › winged helix domain › ArsR 0.68 46.0 4.56e-01 85.7% 66.7%
3686218 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 42.0 3.38e-01 85.7% 31.8%
3398226 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.67 46.0 4.82e-01 96.4% 80.0%
3405249 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.66 46.0 4.77e-01 100.0% 77.4%
4185860 247.1.1.30 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.65 45.0 2.81e-01 92.9% 13.0%
3300493 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.63 52.0 3.72e-01 94.6% 76.1%
3773803 386.1.1.358 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.60 43.0 3.38e-01 100.0% 35.8%
3916572 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 43.0 4.47e-01 98.2% 90.0%
3734463 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.57 49.0 4.18e-01 98.2% 88.4%
3213253 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 50.0 3.49e-01 98.2% 76.1%
4406660 2006.1.3.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DNA_gyraseB_C,Toprim 0.55 50.0 3.23e-01 100.0% 30.0%
3353864 101.1.2.212 ↗ alpha arrays › HTH › HTH › winged helix domain › Cac1_C 0.55 37.0 3.54e-01 85.7% 57.1%
5059709 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 35.0 3.50e-01 85.7% 61.7%
4335388 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.55 43.0 3.04e-01 87.5% 41.0%
3616177 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 46.0 3.62e-01 94.6% 64.2%
4449126 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.54 43.0 2.89e-01 87.5% 35.3%
5020380 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.54 48.0 3.28e-01 100.0% 66.5%
5018788 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.54 41.0 3.52e-01 85.7% 89.5%
3275721 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.52 38.0 3.24e-01 85.7% 45.0%
3770446 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.52 37.0 2.68e-01 85.7% 25.3%
4488855 275.1.1.5 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.51 44.0 3.83e-01 100.0% 63.5%
3238992 2004.1.1.414 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.51 43.0 2.73e-01 100.0% 17.0%
221869 235.1.1.16 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Peptidase_U40 0.50 42.0 3.06e-01 100.0% 32.1%