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NC_048085.1__YP_009814485.1__HOU40_gp098__00098

Bact-Vir

NC_048085.1__YP_009814485.1__HOU40_gp098__00098

Identity

Accession:
NC_048085 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Harbinvirus› Lactobacillus_phage_Bromius

TaxID: 2315485

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-86
PDB
Domain cluster: rep: KP054477.1__AIZ94739.1__LfeInf_113__00113__D7-81
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.66 50.0 5.07e-01 92.6% 82.5%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 41.0 4.58e-01 86.4% 93.3%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 46.0 2.97e-01 82.7% 38.6%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 49.0 3.28e-01 90.1% 95.2%
4wvmA04 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 48.0 3.61e-01 87.7% 56.2%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.59e-01 88.9% 55.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 2.83e-01 85.2% 93.1%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.58 45.0 2.83e-01 84.0% 34.4%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 45.0 4.00e-01 85.2% 70.8%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.99e-01 90.1% 94.9%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.57 48.0 3.79e-01 93.8% 57.3%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 39.0 3.16e-01 85.2% 35.6%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.99e-01 84.0% 78.2%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 39.0 2.76e-01 72.8% 44.0%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.56 43.0 3.65e-01 90.1% 48.6%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.84e-01 85.2% 82.3%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 3.87e-01 84.0% 59.6%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.44e-01 90.1% 59.8%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.68e-01 87.7% 74.3%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 45.0 3.48e-01 87.7% 58.2%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 3.80e-01 85.2% 63.0%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 47.0 3.71e-01 93.8% 53.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 39.0 3.32e-01 76.5% 79.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.71e-01 84.0% 73.7%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 40.0 3.65e-01 84.0% 60.5%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.65e-01 81.5% 63.6%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 41.0 3.85e-01 84.0% 98.0%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.53 41.0 3.51e-01 85.2% 75.2%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 40.0 2.69e-01 82.7% 23.1%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 42.0 2.97e-01 88.9% 80.6%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.51e-01 91.4% 49.7%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.68e-01 100.0% 61.7%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 45.0 3.47e-01 100.0% 90.7%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 45.0 2.80e-01 100.0% 97.3%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.89e-01 100.0% 92.9%
1euvA02 3.30.310.130 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related 0.50 43.0 4.02e-01 100.0% 76.2%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 2.86e-01 88.9% 64.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226303 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.62 47.0 3.73e-01 90.1% 38.8%
3887913 223.2.1.40 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN 0.61 47.0 3.81e-01 90.1% 43.2%
3593291 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 46.0 3.85e-01 90.1% 46.2%
3402864 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 49.0 4.02e-01 88.9% 79.7%
4016261 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.59 48.0 3.24e-01 91.4% 71.5%
3699834 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.59 51.0 4.51e-01 100.0% 81.6%
3601837 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 53.0 3.27e-01 100.0% 98.5%
3827973 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 43.0 2.92e-01 81.5% 27.8%
3501948 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.57 51.0 3.84e-01 98.8% 50.3%
3603190 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 44.0 2.59e-01 82.7% 16.6%
3407532 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.57 35.0 4.16e-01 79.0% 100.0%
5033415 5.1.5.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.57 44.0 2.84e-01 84.0% 48.1%
3448051 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 44.0 3.10e-01 82.7% 56.7%
3941131 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.56 43.0 2.82e-01 81.5% 38.9%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.56 47.0 3.92e-01 95.1% 91.9%
3989856 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 47.0 3.96e-01 93.8% 97.1%
4955729 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 3.60e-01 90.1% 47.6%
4647210 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 45.0 2.84e-01 88.9% 48.0%
4027070 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 3.41e-01 90.1% 45.9%
4568749 2004.1.1.585 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.55 43.0 2.87e-01 85.2% 21.7%
5014331 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.55 43.0 2.54e-01 85.2% 10.3%
4010689 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 48.0 4.53e-01 100.0% 82.0%
3934185 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 48.0 4.03e-01 98.8% 59.7%
5059491 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 38.0 2.90e-01 72.8% 60.5%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 30.0 3.54e-01 76.5% 84.0%
2442052 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.54 39.0 3.28e-01 76.5% 76.2%
3589339 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.54 43.0 4.16e-01 88.9% 74.7%
3487292 5.1.4.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.54 42.0 2.57e-01 85.2% 42.8%
3642733 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 46.0 3.06e-01 92.6% 89.8%
4458125 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 48.0 3.14e-01 100.0% 94.6%
3819081 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 48.0 3.18e-01 97.5% 92.5%
3900687 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 48.0 3.09e-01 100.0% 92.9%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 40.0 2.62e-01 81.5% 31.8%
3911919 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.52 47.0 3.01e-01 100.0% 94.1%
4856205 1032.1.1.2 ↗ alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore, PF30720 0.51 41.0 3.10e-01 90.1% 50.2%
3603483 3513.1.1.0 ↗ a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA 0.51 39.0 3.41e-01 82.7% 84.8%
3330941 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 39.0 3.57e-01 84.0% 79.1%
154136 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.50 45.0 2.90e-01 100.0% 92.7%
3753034 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.85e-01 97.5% 96.0%
3660574 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.64e-01 88.9% 60.3%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.50 40.0 3.68e-01 88.9% 73.6%
3620679 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.50 41.0 3.24e-01 92.6% 48.1%