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NC_048085.1__YP_009814488.1__HOU40_gp101__00101

Bact-Vir

NC_048085.1__YP_009814488.1__HOU40_gp101__00101

Identity

Accession:
NC_048085 ↗
Kingdom:
phage

Quality

51.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-64
PDB
D2 high residues 91-178
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.75 55.0 4.87e-01 76.1% 99.2%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.72 53.0 4.84e-01 77.3% 99.1%
2gkmA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.70 51.0 4.52e-01 76.1% 89.8%
1h97A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.69 50.0 4.25e-01 76.1% 96.6%
3aq5A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 51.0 4.62e-01 79.5% 99.1%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 56.0 5.16e-01 96.6% 93.9%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.62 44.0 4.90e-01 79.5% 100.0%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.61 43.0 4.20e-01 73.9% 70.7%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 49.0 5.10e-01 90.9% 98.7%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 39.0 4.47e-01 72.7% 100.0%
4l8kA01 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.61 50.0 5.02e-01 90.9% 91.1%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.61 43.0 4.85e-01 87.5% 98.5%
1oglA01 1.20.1680.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatases › Type II deoxyuridine triphosphatase 0.60 51.0 4.71e-01 96.6% 100.0%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.60 40.0 4.18e-01 77.3% 75.3%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 52.0 4.61e-01 95.5% 76.4%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.59 47.0 4.83e-01 92.0% 90.7%
2mb9A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.59 40.0 3.82e-01 88.6% 57.5%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.59 46.0 4.02e-01 84.1% 82.8%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.59 47.0 4.73e-01 89.8% 97.8%
2rkvA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 50.0 3.85e-01 97.7% 81.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.58 41.0 3.72e-01 72.7% 93.2%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 4.09e-01 81.8% 66.7%
6wfqC01 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.57 46.0 3.96e-01 87.5% 62.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 39.0 3.61e-01 71.6% 92.9%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 49.0 4.11e-01 98.9% 78.3%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 4.06e-01 94.3% 72.4%
4u2vA02 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 35.0 3.67e-01 80.7% 68.8%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 41.0 4.02e-01 80.7% 70.7%
1p99A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 47.0 4.02e-01 94.3% 81.2%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.55 37.0 3.88e-01 70.5% 78.2%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.55 45.0 4.64e-01 97.7% 98.8%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 48.0 4.51e-01 97.7% 88.2%
2fefA01 1.20.1440.70 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like 0.55 46.0 4.18e-01 95.5% 82.4%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.55 44.0 4.04e-01 89.8% 68.1%
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.53 45.0 4.49e-01 96.6% 100.0%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 46.0 3.62e-01 100.0% 84.7%
1j3eA00 1.20.1380.10 Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain 0.52 43.0 3.96e-01 89.8% 83.5%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.52 41.0 4.14e-01 85.2% 83.3%
2qvwB05 1.10.1740.150 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.52 36.0 3.83e-01 73.9% 82.9%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.52 43.0 4.27e-01 94.3% 92.5%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.51 43.0 4.07e-01 93.2% 82.9%
6cxtB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 36.0 3.37e-01 73.9% 60.7%
2g8yA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.51 43.0 4.01e-01 95.5% 98.2%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.51 37.0 3.39e-01 78.4% 60.3%
4irnA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.50 35.0 3.23e-01 73.9% 55.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3212282 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 62.0 5.91e-01 90.9% 79.0%
3729240 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.73 66.0 5.77e-01 100.0% 76.9%
4035675 103.7.1.2 alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 0.71 52.0 5.41e-01 86.4% 83.7%
4341260 148.1.3.257 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF494 0.71 53.0 5.08e-01 87.5% 69.0%
4974816 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 59.0 5.49e-01 90.9% 83.6%
3427839 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.70 56.0 5.72e-01 90.9% 90.6%
3716548 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.69 52.0 4.97e-01 87.5% 67.6%
3597638 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.69 54.0 5.58e-01 88.6% 93.8%
3995940 148.1.3.45 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid 0.68 58.0 5.24e-01 94.3% 77.5%
4160317 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.67 54.0 5.01e-01 88.6% 73.0%
3278839 590.1.1.1 alpha bundles › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Dak2 0.67 56.0 4.32e-01 93.2% 98.0%
4466734 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.66 53.0 4.92e-01 89.8% 67.8%
3716219 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 58.0 5.24e-01 97.7% 80.8%
3617759 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.66 48.0 5.28e-01 81.8% 98.6%
5025644 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.66 52.0 5.48e-01 86.4% 98.8%
4926806 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.52e-01 71.6% 94.4%
3453016 101.1.1.138 alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.65 44.0 4.84e-01 73.9% 93.8%
3889356 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.65 55.0 4.03e-01 94.3% 51.0%
5034808 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.65 48.0 5.22e-01 80.7% 100.0%
2320584 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.64 53.0 5.16e-01 90.9% 83.5%
3619395 621.1.1.2 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.64 45.0 4.63e-01 72.7% 92.8%
4931700 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.64 47.0 5.14e-01 81.8% 100.0%
3700659 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 51.0 4.84e-01 90.9% 74.5%
5076000 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.63 47.0 5.08e-01 80.7% 100.0%
3172193 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.63 51.0 4.14e-01 89.8% 45.7%
2570230 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.63 51.0 5.05e-01 88.6% 91.2%
4988064 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.63 46.0 5.04e-01 80.7% 100.0%
4944899 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 49.0 4.99e-01 87.5% 95.3%
3218544 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 49.0 5.12e-01 89.8% 100.0%
5073394 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.62 50.0 4.97e-01 89.8% 97.8%
3216082 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 36.0 3.30e-01 97.7% 44.3%
3219902 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.61 42.0 4.42e-01 87.5% 80.0%
3703000 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.61 44.0 4.79e-01 86.4% 95.7%
4812867 6164.1.1.4 alpha bundles › Bestrophin › Bestrophin › Bestrophin › Bestrophin_2 0.60 48.0 3.64e-01 89.8% 75.4%
185159 3552.1.1.1 alpha arrays › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › Pfam family PF09836 N-terminal domain › DUF2063 0.59 47.0 4.78e-01 92.0% 87.6%
5045848 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.59 53.0 4.08e-01 100.0% 65.5%
3998880 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 43.0 4.29e-01 89.8% 73.7%
3953824 628.1.1.1 alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.59 44.0 3.88e-01 80.7% 63.7%
3283706 628.1.1.1 alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.59 45.0 3.87e-01 81.8% 63.6%
2430288 3651.1.1.1 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.58 40.0 3.49e-01 72.7% 44.8%
5053768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.36e-01 100.0% 27.3%
4937394 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.58 46.0 4.83e-01 92.0% 97.5%
5012706 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 44.0 4.11e-01 84.1% 70.4%
3885941 101.1.1.132 alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N 0.57 38.0 4.11e-01 71.6% 85.7%
3838401 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.56 44.0 4.25e-01 84.1% 82.0%
3800176 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 43.0 4.43e-01 93.2% 88.2%
4942190 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.55 46.0 4.62e-01 96.6% 94.3%
4943306 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.54 44.0 3.63e-01 89.8% 48.5%
4363995 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.54 44.0 3.81e-01 88.6% 60.7%
3534466 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.54 36.0 4.06e-01 77.3% 95.4%
136582 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.52 43.0 4.18e-01 94.3% 86.0%
2439947 4033.1.1.1 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.51 36.0 3.43e-01 73.9% 64.2%
3282584 191.1.1.18 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 0.50 34.0 3.10e-01 70.5% 74.4%