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NC_048086.1__YP_009814632.1__HOU41_gp131__00073

Bact-Vir

NC_048086.1__YP_009814632.1__HOU41_gp131__00073

Identity

Accession:
NC_048086 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Novosibvirus› Proteus_phage_Stubb

TaxID: 2315597

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-87
PDB
Domain cluster: rep: OP688485.1__WBU87678.1__X__00053__D4-76
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.59 27.0 3.18e-01 71.1% 61.4%
3uk7A01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 39.0 3.05e-01 77.1% 96.8%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.54 21.0 2.90e-01 100.0% 71.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 44.0 3.91e-01 100.0% 64.1%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 37.0 3.13e-01 75.9% 59.5%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.43e-01 75.9% 87.0%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.51 41.0 3.28e-01 91.6% 67.6%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.51 42.0 3.94e-01 100.0% 74.0%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.34e-01 91.6% 76.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079388 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.63 46.0 3.52e-01 100.0% 33.7%
3792981 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 45.0 3.70e-01 78.3% 68.7%
3597347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.53e-01 92.8% 71.7%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 3.46e-01 73.5% 48.7%
3180942 2.1.1.194 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.58 41.0 3.37e-01 74.7% 89.3%
3688038 2.1.1.194 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.57 41.0 3.49e-01 74.7% 85.4%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.57 40.0 3.24e-01 73.5% 46.3%
3974369 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 43.0 4.33e-01 100.0% 87.1%
160389 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 45.0 3.92e-01 92.8% 68.3%
4934245 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 47.0 3.78e-01 100.0% 56.9%
3965594 1.1.13.53 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.51 43.0 4.14e-01 100.0% 80.0%
4568828 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.51 45.0 4.28e-01 100.0% 95.0%
3712524 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.50 28.0 3.28e-01 98.8% 80.0%
D2 high residues 95-150
PDB
Domain cluster: rep: NC_042090.1__YP_009620630.1__FDJ15_gp063__00063__D7-59