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NC_048087.1__YP_009814718.1__HOU42_gp011__00011

Bact-Vir

NC_048087.1__YP_009814718.1__HOU42_gp011__00011

Identity

Accession:
NC_048087 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Schiekvirus› Enterococcus_phage_EfV12-phi1

TaxID: 2315766

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.69 49.0 4.59e-01 76.8% 85.7%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.69 50.0 4.87e-01 82.1% 96.9%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 49.0 4.50e-01 82.1% 90.8%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 50.0 4.21e-01 87.5% 76.5%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 47.0 4.21e-01 82.1% 92.8%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 47.0 4.35e-01 85.7% 98.7%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 45.0 4.05e-01 80.4% 66.7%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 46.0 4.12e-01 82.1% 89.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 46.0 4.17e-01 82.1% 91.1%
1tvdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.56e-01 78.6% 81.9%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 43.0 4.33e-01 78.6% 94.9%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 44.0 3.92e-01 82.1% 91.8%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.39e-01 82.1% 44.0%
4melA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 44.0 3.85e-01 85.7% 76.6%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 46.0 4.07e-01 94.6% 83.5%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 42.0 4.05e-01 80.4% 98.5%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.44e-01 76.8% 74.0%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 42.0 4.20e-01 85.7% 93.2%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 45.0 3.77e-01 91.1% 96.2%
7fh5A01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.57 41.0 2.74e-01 80.4% 24.2%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 46.0 3.01e-01 98.2% 24.2%
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 41.0 2.89e-01 80.4% 33.2%
4cp8E00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.55 42.0 2.56e-01 89.3% 69.1%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.09e-01 82.1% 94.7%
3al9A02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.53 36.0 3.64e-01 71.4% 100.0%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.53 36.0 2.93e-01 73.2% 54.1%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 35.0 2.74e-01 71.4% 43.1%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 42.0 3.58e-01 100.0% 65.1%
4a37A01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.58e-01 100.0% 92.0%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 38.0 3.44e-01 85.7% 100.0%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 2.94e-01 71.4% 66.7%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.34e-01 96.4% 76.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4527067 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.67 54.0 3.60e-01 96.4% 40.0%
None — 0.67 55.0 3.88e-01 98.2% 40.0%
4165484 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.67 54.0 3.84e-01 98.2% 39.0%
4619775 206.1.3.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP 0.65 54.0 3.82e-01 98.2% 39.2%
4156870 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.65 48.0 4.11e-01 82.1% 81.1%
4681298 304.24.1.16 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA 0.64 47.0 4.04e-01 83.9% 54.0%
3708434 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 3.78e-01 87.5% 59.3%
3817993 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.63 47.0 3.68e-01 82.1% 62.4%
3322600 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.62 47.0 4.18e-01 83.9% 83.5%
2777647 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.62 51.0 3.68e-01 98.2% 41.5%
3978801 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.61 45.0 4.04e-01 83.9% 75.3%
3241250 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 3.84e-01 85.7% 82.9%
5036959 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 45.0 3.35e-01 91.1% 43.3%
4880373 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 50.0 3.60e-01 98.2% 39.9%
3251004 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.59 42.0 3.64e-01 76.8% 85.6%
5037556 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 42.0 2.83e-01 78.6% 78.4%
5021697 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.58 49.0 3.69e-01 98.2% 64.1%
3257775 4988.1.1.0 ↗ a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain 0.58 43.0 4.23e-01 87.5% 81.5%
4298207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.48e-01 85.7% 51.7%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 41.0 3.68e-01 82.1% 95.5%
4075828 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.56 46.0 3.26e-01 100.0% 47.1%
5052022 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.56 41.0 3.04e-01 80.4% 46.8%
3244558 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.56 38.0 2.40e-01 73.2% 17.6%
4983428 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.56 41.0 2.96e-01 83.9% 31.8%
4946101 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 41.0 3.51e-01 85.7% 93.3%
3908904 10.32.1.229 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.55 41.0 3.38e-01 87.5% 71.2%
4958917 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.55 41.0 3.73e-01 83.9% 72.5%
3204956 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 43.0 3.61e-01 100.0% 68.3%
4168248 4988.1.1.1 ↗ a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal_S8 0.54 40.0 4.02e-01 87.5% 82.8%
4971330 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 39.0 3.29e-01 82.1% 83.6%
4962625 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.51 35.0 2.73e-01 75.0% 46.7%
3854697 109.4.1.1506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_6, TPR_IMB1, TPR_IPO5 0.50 38.0 2.07e-01 83.9% 7.6%