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NC_048096.1__YP_009815556.1__HOU51_gp06__00006
Bact-VirNC_048096.1__YP_009815556.1__HOU51_gp06__00006
Identity
- Accession:
- NC_048096 ↗
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Taxonomy
TaxID: 2419965
Cluster
View cluster (21 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-147_256-326
Domain cluster:
rep: IMGVR_UViG_3300002120_000098-3300002120-C687J26616_100029157__D29-50_74-150_259-304
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05065.20 best | Phage_capsid | 39.7 | 5.30e-10 | 61.3% | 38.8% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.82 | 63.0 | 7.10e-01 | 83.3% | 100.0% |
| 6i9gA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.64 | 50.0 | 5.24e-01 | 88.7% | 88.8% |
| 3dktA01 | 3.30.2400.30 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.63 | 49.0 | 5.16e-01 | 88.7% | 88.8% |
| 4a2aA02 | 3.30.1490.110 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.61 | 30.0 | 4.25e-01 | 82.8% | 100.0% |
| 4hvzA01 | 3.30.110.170 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Protein of unknown function (DUF541), domain 1 | 0.60 | 34.0 | 4.45e-01 | 74.7% | 100.0% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.58 | 54.0 | 4.56e-01 | 100.0% | 95.9% |
| 2hhpA03 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.56 | 32.0 | 3.57e-01 | 78.5% | 68.9% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.94 | 87.0 | 7.05e-01 | 95.7% | 90.8% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.88 | 82.0 | 6.84e-01 | 96.8% | 96.6% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.88 | 81.0 | 6.67e-01 | 95.7% | 91.1% |
| 2989289 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.86 | 79.0 | 6.39e-01 | 95.7% | 90.7% |
| 1877546 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.81 | 75.0 | 6.19e-01 | 95.7% | 92.0% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.80 | 74.0 | 6.09e-01 | 95.7% | 92.2% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.76 | 70.0 | 5.87e-01 | 95.7% | 92.5% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.76 | 70.0 | 5.80e-01 | 95.7% | 90.2% |
| 2841997 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.73 | 67.0 | 5.22e-01 | 95.7% | 93.7% |
| 3088027 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 66.0 | 5.76e-01 | 95.2% | 90.7% |
| 2968064 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.72 | 66.0 | 5.23e-01 | 95.2% | 93.1% |
| 3110786 | 2485.3.1.14 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like | 0.72 | 66.0 | 5.25e-01 | 95.7% | 86.9% |
| 3026399 | 3555.1.1.1 ↗ | a+b three layers › Major capsid protein GP7 › Major capsid protein GP7 › Major capsid protein GP7 › GP7 | 0.72 | 65.0 | 5.21e-01 | 95.7% | 62.6% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 68.0 | 5.68e-01 | 100.0% | 95.3% |
| 2995325 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.71 | 64.0 | 5.03e-01 | 95.7% | 90.2% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 65.0 | 5.26e-01 | 95.7% | 92.9% |
| 3075730 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 64.0 | 5.23e-01 | 95.7% | 88.4% |
| 2899245 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.71 | 64.0 | 5.12e-01 | 95.7% | 91.4% |
| 2538948 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.71 | 64.0 | 5.38e-01 | 95.7% | 89.3% |
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 66.0 | 5.61e-01 | 100.0% | 93.5% |
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.70 | 63.0 | 4.81e-01 | 95.7% | 84.8% |
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.70 | 63.0 | 5.03e-01 | 95.7% | 94.3% |
| 5041371 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.70 | 66.0 | 5.47e-01 | 100.0% | 99.4% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 68.0 | 5.77e-01 | 100.0% | 91.6% |
| 3963274 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.69 | 59.0 | 4.70e-01 | 91.4% | 99.2% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.68 | 61.0 | 5.31e-01 | 94.1% | 99.6% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.68 | 63.0 | 5.14e-01 | 96.8% | 91.9% |
| 2841509 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.68 | 61.0 | 5.20e-01 | 95.7% | 92.5% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.68 | 61.0 | 5.25e-01 | 95.7% | 90.4% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.67 | 61.0 | 5.11e-01 | 95.7% | 88.0% |
| 2842229 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.67 | 60.0 | 4.76e-01 | 95.7% | 92.1% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.67 | 60.0 | 5.15e-01 | 95.2% | 98.6% |
| 2546181 | 2485.3.1.13 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like | 0.66 | 59.0 | 4.87e-01 | 95.2% | 90.7% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.66 | 59.0 | 5.08e-01 | 96.2% | 92.4% |
| 4954548 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.65 | 62.0 | 5.35e-01 | 100.0% | 97.8% |
| 4890673 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.65 | 59.0 | 4.72e-01 | 95.7% | 91.7% |
| 5080806 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.65 | 59.0 | 5.00e-01 | 94.6% | 99.6% |
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.64 | 58.0 | 4.87e-01 | 95.7% | 91.0% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.64 | 58.0 | 5.10e-01 | 95.7% | 92.5% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.63 | 60.0 | 5.18e-01 | 100.0% | 98.5% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.63 | 60.0 | 5.29e-01 | 100.0% | 96.1% |
| 2806362 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.63 | 58.0 | 5.07e-01 | 97.3% | 89.8% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.63 | 59.0 | 4.96e-01 | 100.0% | 91.0% |
| 3977985 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.62 | 59.0 | 4.69e-01 | 100.0% | 79.3% |
| 4031028 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.62 | 58.0 | 5.01e-01 | 100.0% | 86.8% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.61 | 58.0 | 4.82e-01 | 100.0% | 97.4% |
| 3587769 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.61 | 57.0 | 4.85e-01 | 100.0% | 93.4% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.61 | 57.0 | 5.24e-01 | 100.0% | 99.6% |
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.61 | 57.0 | 5.15e-01 | 100.0% | 95.1% |
| 5011908 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.60 | 56.0 | 5.12e-01 | 100.0% | 93.8% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.59 | 55.0 | 4.52e-01 | 100.0% | 91.6% |
| 5081455 | 2485.3.1.15 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT | 0.59 | 55.0 | 4.67e-01 | 100.0% | 96.3% |
| 3164700 | 2485.3.1.15 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT | 0.59 | 55.0 | 4.71e-01 | 99.5% | 82.7% |
| 2553816 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.57 | 54.0 | 4.73e-01 | 100.0% | 92.5% |
| 3588084 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.57 | 53.0 | 4.46e-01 | 100.0% | 91.5% |
| 2724409 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.56 | 52.0 | 4.61e-01 | 100.0% | 92.8% |
| 3603036 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.55 | 52.0 | 4.63e-01 | 100.0% | 98.4% |
| 2048179 | 2485.3.1.8 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein | 0.54 | 42.0 | 4.03e-01 | 95.2% | 69.3% |
| 3638284 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.53 | 31.0 | 4.01e-01 | 75.3% | 100.0% |
| 3110810 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.53 | 46.0 | 4.11e-01 | 95.7% | 66.0% |
| 4867072 | 2485.3.1.8 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein | 0.53 | 42.0 | 4.20e-01 | 95.7% | 81.2% |
D2
high
residues 151-250
Domain cluster:
rep: MT308575.1__QLF88637.1__X__00001__D197-279
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.72 | 58.0 | 5.71e-01 | 99.0% | 81.9% |
| 5jipA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 46.0 | 3.56e-01 | 88.0% | 73.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.97 | 94.0 | 6.29e-01 | 100.0% | 31.7% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.85 | 76.0 | 5.22e-01 | 100.0% | 30.9% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.78 | 72.0 | 4.99e-01 | 100.0% | 33.2% |
| 2989289 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.78 | 72.0 | 4.93e-01 | 100.0% | 33.7% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.74 | 68.0 | 4.73e-01 | 100.0% | 34.7% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.72 | 60.0 | 4.27e-01 | 100.0% | 30.0% |
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.71 | 64.0 | 4.53e-01 | 100.0% | 33.4% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.70 | 57.0 | 4.11e-01 | 100.0% | 31.4% |
| 1870502 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.57 | 46.0 | 3.56e-01 | 88.0% | 73.9% |
| 5065327 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.53 | 44.0 | 3.23e-01 | 95.0% | 51.0% |