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NC_048096.1__YP_009815557.1__HOU51_gp07__00007

Bact-Vir

NC_048096.1__YP_009815557.1__HOU51_gp07__00007

Identity

Accession:
NC_048096 ↗
Kingdom:
phage

Quality

62.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bridgettevirus› Arthrobacter_phage_Peas

TaxID: 2419965

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-77
PDB
Domain cluster: rep: OM868082.1__UPT53432.1__X__00062__D7-97
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 64.0 6.09e-01 98.5% 100.0%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 63.0 6.15e-01 98.5% 100.0%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.72 63.0 5.61e-01 100.0% 91.8%
3okxB00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.71 61.0 4.74e-01 95.6% 82.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 62.0 6.19e-01 100.0% 97.2%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 63.0 5.86e-01 100.0% 98.8%
3co8A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.70 62.0 4.85e-01 100.0% 70.3%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.67 58.0 4.03e-01 98.5% 32.8%
3gwqA01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.66 57.0 4.32e-01 100.0% 48.3%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.65 56.0 5.07e-01 100.0% 94.8%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 54.0 3.40e-01 100.0% 17.1%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 49.0 5.12e-01 95.6% 100.0%
4aq1A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 4.69e-01 95.6% 71.3%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.58e-01 97.1% 78.9%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 4.32e-01 97.1% 97.7%
1bliA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 44.0 4.18e-01 97.1% 72.4%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 4.05e-01 97.1% 72.3%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.55 44.0 2.72e-01 97.1% 12.9%
4u4iA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.54 45.0 3.81e-01 98.5% 80.2%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 43.0 3.74e-01 100.0% 73.8%
3oepA04 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.53 45.0 3.89e-01 98.5% 77.3%
4r70B01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 41.0 3.02e-01 89.7% 92.1%
6g20A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 40.0 3.00e-01 88.2% 90.8%
3turB01 2.60.40.3710 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.52e-01 94.1% 63.0%
3zxaC02 2.60.40.3420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.74e-01 100.0% 98.1%
1w9sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.50e-01 100.0% 95.5%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.53e-01 100.0% 53.7%
2k0rA00 2.60.40.1250 Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain 0.50 39.0 3.31e-01 89.7% 90.6%
3lsoA01 2.60.40.2270 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.28e-01 100.0% 79.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969204 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.84 77.0 7.44e-01 100.0% 96.0%
4026674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.83 76.0 7.18e-01 100.0% 95.0%
3739976 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.81 74.0 6.85e-01 100.0% 96.5%
3782195 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.81 74.0 6.84e-01 100.0% 96.5%
3944437 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.80 73.0 6.87e-01 100.0% 96.2%
3781314 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 72.0 6.54e-01 100.0% 95.6%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.79 70.0 6.80e-01 97.1% 94.7%
3177070 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.79 70.0 6.61e-01 97.1% 100.0%
3712506 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 71.0 6.57e-01 100.0% 90.6%
4217174 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 66.0 6.59e-01 98.5% 95.7%
4556837 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 57.0 5.72e-01 85.3% 81.4%
5080901 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 63.0 5.98e-01 100.0% 86.3%
4926946 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.70 62.0 5.81e-01 100.0% 92.9%
4959432 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 61.0 5.78e-01 100.0% 87.5%
3177101 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.66 58.0 5.12e-01 98.5% 96.0%
4625449 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.26e-01 100.0% 96.7%
4441313 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.29e-01 100.0% 94.4%
3596767 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.66 57.0 5.04e-01 98.5% 95.0%
1515984 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.65 56.0 5.02e-01 98.5% 95.0%
5015359 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.63 54.0 5.06e-01 100.0% 92.9%
3264420 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.62 53.0 5.04e-01 95.6% 92.5%
4171947 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 54.0 4.97e-01 100.0% 88.9%
3883703 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 52.0 4.62e-01 95.6% 85.0%
1862382 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 52.0 4.34e-01 98.5% 65.3%
1877252 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 52.0 4.63e-01 98.5% 81.2%
3533650 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 52.0 4.68e-01 97.1% 82.1%
1877267 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.16e-01 100.0% 55.5%
3395709 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.60 51.0 4.63e-01 97.1% 84.2%
3199788 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 47.0 4.21e-01 98.5% 63.0%
3255717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.64e-01 100.0% 85.9%
3266786 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.57 48.0 4.48e-01 100.0% 76.7%
3224115 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 48.0 4.41e-01 97.1% 81.1%
3254159 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.57 47.0 4.30e-01 98.5% 80.0%
3273437 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.31e-01 100.0% 76.0%
3250855 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.56 46.0 4.36e-01 100.0% 78.9%
3252382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 4.15e-01 95.6% 79.0%
3251398 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.55 47.0 4.32e-01 97.1% 84.4%
3275452 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.03e-01 100.0% 63.6%
3723630 12.1.1.10 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amy_C_pro 0.55 47.0 4.13e-01 98.5% 63.8%
4636502 11.1.1.171 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.55 44.0 3.75e-01 94.1% 64.8%
1840969 11.1.1.256 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.55 44.0 4.16e-01 97.1% 80.2%
3277157 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.48e-01 100.0% 93.3%
3883683 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.15e-01 100.0% 80.0%
3248952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.33e-01 100.0% 84.7%
3251334 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.28e-01 100.0% 84.7%
4324908 11.1.1.252 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG1 0.54 43.0 3.83e-01 94.1% 64.5%
5002657 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.54 44.0 4.21e-01 100.0% 97.6%
3268652 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.00e-01 100.0% 82.0%
4955177 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 43.0 3.88e-01 100.0% 70.5%
4970326 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 42.0 3.90e-01 98.5% 91.6%
3487824 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.23e-01 100.0% 72.8%
3691109 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.51 42.0 3.54e-01 97.1% 53.5%
3915698 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.52e-01 79.4% 85.9%
3811471 2003.1.2.34 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase 0.51 37.0 3.47e-01 79.4% 74.4%
4995368 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.51 42.0 3.53e-01 100.0% 54.8%
3243264 390.1.1.7 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.51 37.0 3.11e-01 80.9% 98.5%