←Back to structures

NC_048098.1__YP_009815722.1__HOU53_gp36__00036

Bact-Vir

NC_048098.1__YP_009815722.1__HOU53_gp36__00036

Identity

Accession:
NC_048098 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andrewvirus› Arthrobacter_phage_Andrew

TaxID: 2419946

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-70
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 63.0 6.39e-01 100.0% 79.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 60.0 6.22e-01 100.0% 81.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 57.0 5.60e-01 100.0% 69.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 5.53e-01 100.0% 69.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 6.25e-01 100.0% 98.0%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 6.21e-01 100.0% 89.5%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 5.85e-01 100.0% 96.2%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.71 65.0 5.49e-01 100.0% 81.2%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.28e-01 100.0% 70.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.52e-01 100.0% 81.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 55.0 5.65e-01 100.0% 95.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.07e-01 100.0% 71.8%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 46.0 3.62e-01 100.0% 36.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.66 47.0 4.72e-01 100.0% 72.7%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.74e-01 100.0% 68.8%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.28e-01 100.0% 93.2%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 56.0 5.31e-01 100.0% 86.8%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 5.34e-01 100.0% 100.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.51e-01 100.0% 65.1%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.63 58.0 4.44e-01 100.0% 60.2%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 5.10e-01 100.0% 86.6%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 5.00e-01 100.0% 85.0%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.94e-01 100.0% 86.4%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 4.17e-01 87.3% 81.8%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 5.00e-01 100.0% 82.7%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 51.0 4.90e-01 100.0% 89.2%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 47.0 3.33e-01 100.0% 29.3%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.58 46.0 3.86e-01 100.0% 50.0%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 3.12e-01 79.4% 37.9%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 42.0 3.20e-01 100.0% 33.7%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 2.81e-01 100.0% 32.3%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.88e-01 100.0% 67.3%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.40e-01 92.1% 92.5%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.52 42.0 2.97e-01 93.7% 28.0%
2fa1A00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 40.0 3.18e-01 92.1% 76.1%
3dr6B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.19e-01 93.7% 48.5%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 36.0 2.96e-01 76.2% 38.4%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.51 42.0 4.01e-01 92.1% 96.0%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.50 42.0 3.67e-01 95.2% 78.8%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.89 69.0 4.97e-01 100.0% 32.9%
3519125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 60.0 6.68e-01 100.0% 90.0%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 65.0 6.45e-01 100.0% 75.4%
4984882 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.87 64.0 6.21e-01 100.0% 70.0%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.87 64.0 6.61e-01 100.0% 81.7%
3237859 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 61.0 6.52e-01 100.0% 85.5%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 64.0 5.02e-01 100.0% 41.7%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 56.0 3.95e-01 100.0% 25.7%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 61.0 5.26e-01 100.0% 55.8%
4400641 4.1.1.397 ↗ beta barrels › SH3 › SH3 › SH3 › PF29622 0.77 72.0 6.56e-01 100.0% 88.7%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.77 66.0 4.69e-01 100.0% 33.1%
3889551 4.1.1.134 ↗ beta barrels › SH3 › SH3 › SH3 › MUM1-like_PWWP 0.77 62.0 4.98e-01 100.0% 45.8%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 70.0 5.24e-01 100.0% 53.6%
3520064 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.75 50.0 4.88e-01 96.8% 62.9%
3229184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 69.0 6.17e-01 100.0% 89.4%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.73 57.0 5.89e-01 100.0% 86.7%
3390503 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.72 50.0 5.01e-01 96.8% 70.8%
3612092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 66.0 6.23e-01 100.0% 94.7%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 63.0 4.77e-01 100.0% 42.1%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 62.0 5.59e-01 100.0% 70.6%
3998955 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 65.0 5.34e-01 100.0% 67.3%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 65.0 4.82e-01 100.0% 48.0%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 59.0 5.45e-01 100.0% 72.5%
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 6.10e-01 100.0% 92.2%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.69 57.0 5.48e-01 100.0% 78.6%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 57.0 5.23e-01 100.0% 70.0%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 61.0 5.77e-01 100.0% 86.7%
3649839 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.69 64.0 4.99e-01 100.0% 87.2%
3422087 4.1.1.282 ↗ beta barrels › SH3 › SH3 › SH3 › GUB_WAK_bind 0.69 48.0 4.35e-01 93.7% 55.4%
3264807 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.69 64.0 5.11e-01 100.0% 85.2%
3302816 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.68 63.0 4.89e-01 100.0% 83.8%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 60.0 4.54e-01 100.0% 42.1%
4024912 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.68 63.0 4.98e-01 100.0% 82.5%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.52e-01 100.0% 86.2%
3939941 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.68 63.0 4.85e-01 100.0% 85.4%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 58.0 4.32e-01 100.0% 39.3%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.67 61.0 4.73e-01 100.0% 47.7%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.67 53.0 5.18e-01 100.0% 77.1%
3586192 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.67 51.0 4.82e-01 95.2% 69.3%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 55.0 4.79e-01 100.0% 60.0%
4153457 4.1.1.299 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.66 61.0 4.66e-01 100.0% 86.7%
3625996 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.66 52.0 4.47e-01 96.8% 54.0%
3879216 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.47e-01 98.4% 89.3%
509 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 57.0 5.25e-01 100.0% 83.1%
3658643 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 55.0 4.20e-01 100.0% 40.0%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.65 61.0 5.70e-01 100.0% 86.7%
3995388 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.65 59.0 4.73e-01 100.0% 52.5%
3599666 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 58.0 3.46e-01 100.0% 16.6%
3935018 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.64 52.0 4.83e-01 96.8% 70.0%
3629844 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.64 52.0 5.04e-01 96.8% 80.0%
5072949 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 51.0 5.06e-01 100.0% 84.6%
3796536 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.64 50.0 4.67e-01 96.8% 68.8%
3684460 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 57.0 4.92e-01 100.0% 85.3%
4398865 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 56.0 4.87e-01 100.0% 84.2%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.47e-01 100.0% 88.6%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.63 57.0 4.94e-01 100.0% 66.3%
3785009 4.1.1.138 ↗ beta barrels › SH3 › SH3 › SH3 › Ski2_beta-barrel 0.62 57.0 4.41e-01 100.0% 63.1%
3578619 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.62 51.0 4.35e-01 96.8% 55.2%
3627678 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.62 55.0 4.47e-01 100.0% 88.3%
3805095 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 57.0 4.99e-01 100.0% 75.6%
3668787 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 56.0 4.77e-01 100.0% 74.0%
3228778 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 53.0 4.69e-01 96.8% 72.2%
3991018 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.61 52.0 4.85e-01 96.8% 80.0%
3618804 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.60 53.0 4.76e-01 96.8% 74.1%
3618387 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.59 52.0 4.32e-01 100.0% 72.2%
3584246 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.59 53.0 4.48e-01 100.0% 75.0%
3827886 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.59 53.0 4.93e-01 100.0% 81.2%
3180573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 53.0 4.61e-01 100.0% 71.6%
3619225 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.58 52.0 3.76e-01 100.0% 43.3%
3409554 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 51.0 4.44e-01 100.0% 85.3%
3580039 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.57 50.0 3.77e-01 100.0% 48.1%
4020511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 3.58e-01 100.0% 40.0%
3688051 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.57 49.0 3.51e-01 100.0% 91.0%
3517453 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 51.0 4.69e-01 100.0% 88.7%
3800384 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.57 49.0 4.08e-01 100.0% 83.5%
3616598 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.56 49.0 4.34e-01 100.0% 91.6%
3507907 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.56 49.0 3.98e-01 100.0% 56.8%
3235763 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 48.0 4.45e-01 100.0% 100.0%
3707736 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.55 41.0 2.64e-01 84.1% 26.9%
3605154 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 48.0 2.90e-01 100.0% 23.9%
3278408 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 35.0 2.80e-01 77.8% 31.9%
4592182 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.53 43.0 3.74e-01 88.9% 100.0%
None — 0.52 42.0 2.59e-01 96.8% 24.4%
None — 0.52 34.0 2.81e-01 76.2% 33.1%
4338307 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 42.0 2.91e-01 98.4% 41.9%
4227879 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.52 42.0 2.56e-01 96.8% 67.1%
427806 331.3.1.8 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.50 41.0 3.45e-01 95.2% 55.8%