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NC_048101.1__YP_009815961.1__HOU56_gp57__00057

Bact-Vir

NC_048101.1__YP_009815961.1__HOU56_gp57__00057

Identity

Accession:
NC_048101 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Goodmanvirus› Microbacterium_phage_Goodman

TaxID: 2484206

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-77
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.78 51.0 3.98e-01 85.3% 32.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 54.0 5.92e-01 100.0% 96.2%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 45.0 5.28e-01 100.0% 91.3%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.53e-01 100.0% 91.2%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 5.35e-01 100.0% 93.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.35e-01 100.0% 93.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 4.73e-01 100.0% 70.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.29e-01 100.0% 92.2%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 5.03e-01 100.0% 94.7%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 55.0 4.30e-01 100.0% 91.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.94e-01 100.0% 96.7%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 52.0 4.28e-01 100.0% 57.5%
2x2sC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 50.0 4.01e-01 100.0% 96.6%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 52.0 5.01e-01 100.0% 88.2%
1hibA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 50.0 3.99e-01 100.0% 96.7%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.59 50.0 4.05e-01 98.5% 61.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.48e-01 100.0% 81.4%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.73e-01 98.5% 100.0%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.73e-01 100.0% 100.0%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 50.0 4.91e-01 100.0% 89.2%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.57 47.0 3.38e-01 94.1% 86.1%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 43.0 2.74e-01 98.5% 90.2%
2xanA01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.51 43.0 3.41e-01 94.1% 72.0%
3iutA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 3.11e-01 100.0% 35.3%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 41.0 3.37e-01 100.0% 86.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290553 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.87 47.0 4.35e-01 83.8% 43.5%
3335615 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.67 49.0 4.24e-01 85.3% 49.5%
3793311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 52.0 5.48e-01 100.0% 96.7%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 51.0 5.09e-01 100.0% 84.3%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 49.0 4.76e-01 100.0% 74.7%
3801719 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 48.0 4.80e-01 100.0% 78.6%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 48.0 4.72e-01 100.0% 74.7%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 48.0 5.10e-01 100.0% 93.3%
3174058 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 48.0 4.70e-01 100.0% 76.0%
3796536 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.61 46.0 4.35e-01 95.6% 68.8%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 50.0 5.10e-01 98.5% 93.8%
3698582 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 48.0 4.78e-01 100.0% 82.9%
2552660 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 52.0 4.29e-01 100.0% 57.5%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 48.0 4.65e-01 100.0% 81.3%
378 2.1.1.45 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › gp32 0.59 50.0 3.54e-01 94.1% 75.2%
1386398 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 44.0 4.31e-01 100.0% 73.3%
4951886 3174.4.1.0 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.59 51.0 4.67e-01 97.1% 74.4%
4946480 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 43.0 3.04e-01 82.4% 95.6%
4517543 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 51.0 4.20e-01 100.0% 60.8%
3450257 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.58 48.0 4.31e-01 100.0% 66.3%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.67e-01 100.0% 100.0%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 44.0 4.33e-01 100.0% 76.0%
3173222 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.57 46.0 4.00e-01 94.1% 94.8%
3787112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.18e-01 100.0% 73.8%
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 49.0 4.30e-01 100.0% 96.0%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 48.0 4.65e-01 100.0% 88.0%
4959885 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.54 42.0 3.96e-01 97.1% 69.4%
3496242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 4.16e-01 86.8% 98.0%
3598298 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.92e-01 83.8% 80.0%
3594465 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 4.20e-01 76.5% 100.0%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 47.0 4.16e-01 100.0% 68.0%
3439646 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.53 37.0 3.31e-01 75.0% 70.5%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.53 43.0 3.59e-01 92.6% 64.8%
3222614 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.52 42.0 3.61e-01 92.6% 65.2%
3255344 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.51 44.0 3.73e-01 100.0% 71.7%
3705742 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.51 35.0 3.70e-01 83.8% 84.5%