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NC_048102.1__YP_009816007.1__HOU57_gp041__00041

Bact-Vir

Identity

Accession:: NC_048102 ↗
Kingdom:: phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Leucotheavirus› Synechococcus_phage_S-P4

TaxID: 2484640

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 229-361

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1h7zA00	2.60.90.10	Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain	0.62	46.0	4.14e-01	78.9%	86.4%
2h6oA02	2.60.40.2810	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.61	51.0	4.90e-01	91.0%	96.1%
2vtwA00	2.60.90.30	Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain	0.58	43.0	3.79e-01	78.9%	91.2%
6rptC00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	42.0	4.54e-01	88.0%	92.9%
2wstA00	2.60.90.10	Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain	0.56	41.0	3.80e-01	77.4%	96.6%
5jv4A00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.54	38.0	3.76e-01	72.2%	99.3%
2yh6D00	3.30.530.50	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 ›	0.54	39.0	4.28e-01	75.9%	98.2%
3o4oB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	38.0	4.11e-01	85.7%	91.7%
3uezC02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	32.0	3.74e-01	87.2%	94.0%
2dd7A00	2.40.155.10	Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein	0.52	43.0	3.76e-01	92.5%	85.5%
2wiqA00	2.40.155.10	Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein	0.51	43.0	3.68e-01	92.5%	83.1%
4jb9H01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	41.0	4.20e-01	88.7%	96.9%
4tw1B00	2.70.240.10	Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA	0.51	44.0	3.55e-01	98.5%	91.5%
2c9jA00	2.40.155.10	Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein	0.51	43.0	3.72e-01	93.2%	85.9%
1k1yB02	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.50	40.0	3.22e-01	88.0%	44.4%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3611836	304.112.1.0 ↗	a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain	0.60	43.0	4.90e-01	100.0%	99.0%
5022756	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.60	40.0	4.49e-01	87.2%	92.6%
3668360	1.1.7.10 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase	0.53	34.0	3.45e-01	73.7%	63.0%
3863526	11.1.1.108 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2	0.53	40.0	4.24e-01	89.5%	93.9%
3212467	11.1.1.206 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D1	0.53	42.0	3.80e-01	88.0%	61.1%
3609844	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	39.0	3.77e-01	88.7%	68.7%
4976527	264.2.1.0 ↗	beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain	0.52	35.0	3.67e-01	74.4%	72.0%
4636309	5084.1.1.0 ↗	beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like	0.52	46.0	4.01e-01	100.0%	100.0%
1720440	271.1.1.1 ↗	beta barrels › GFP-like › GFP-like › GFP-like › GFP	0.51	43.0	3.63e-01	92.5%	80.3%
3368419	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.51	45.0	4.41e-01	99.2%	97.2%
4024738	220.1.1.243 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062	0.50	33.0	3.67e-01	93.2%	84.8%
4670966	223.1.1.81 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK	0.50	36.0	3.64e-01	87.2%	73.3%

D2 high residues 469-562

PDB

Domain cluster: rep: KJ019128.1__AIX38078.1__Syn7803US88_77__00077__D502-594

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fo8D02	2.40.10.380	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.62	49.0	4.96e-01	85.1%	86.8%
2vtwA00	2.60.90.30	Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain	0.61	42.0	3.32e-01	71.3%	81.5%
3igqC00	2.70.170.10	Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain	0.59	46.0	3.81e-01	86.2%	89.1%
2r41A00	3.10.450.150	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein	0.57	31.0	3.09e-01	97.9%	46.6%
8alzB04	2.60.40.150	Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain	0.57	48.0	4.59e-01	96.8%	86.4%
8owfA01	2.60.40.290	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.54	45.0	4.36e-01	95.7%	88.3%
2r55A00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.54	45.0	3.60e-01	96.8%	82.7%
5cm2Z00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	36.0	2.89e-01	71.3%	53.3%
1bf2A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	45.0	3.86e-01	100.0%	58.6%
5iryA01	2.60.40.60	Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins	0.52	41.0	4.11e-01	94.7%	86.2%
5fl3A01	3.30.450.90	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.52	35.0	3.50e-01	70.2%	99.0%
3vgfA03	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.52	28.0	3.25e-01	90.4%	75.8%
3jvvA01	3.30.450.90	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.51	35.0	3.46e-01	70.2%	99.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3619202	10.10.1.0 ↗	beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain)	0.57	38.0	3.96e-01	87.2%	76.5%
3213160	11.12.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like	0.54	42.0	3.51e-01	87.2%	86.5%
5043215	304.8.1.82 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325	0.54	40.0	3.67e-01	79.8%	90.8%
5015739	304.24.1.44 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PF27325	0.53	37.0	3.55e-01	80.9%	62.7%
3214839	11.10.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like	0.52	45.0	3.83e-01	97.9%	71.2%
4497776	1.1.8.5 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C	0.51	38.0	4.00e-01	86.2%	91.3%
3736741	222.1.1.10 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3	0.50	27.0	2.88e-01	87.2%	56.2%

D3 medium residues 12-57_102-129

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ktbA02	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.59	33.0	3.10e-01	79.7%	44.0%
2di7A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	37.0	3.37e-01	87.8%	51.4%
1wckA00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	39.0	3.23e-01	81.1%	59.6%
6a48A01	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.51	38.0	3.09e-01	81.1%	61.0%
5l73A00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	36.0	2.87e-01	78.4%	50.6%
7y8sA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	36.0	3.33e-01	82.4%	58.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3328167	11.1.1.635 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1	0.54	41.0	3.51e-01	82.4%	56.8%
3703829	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	39.0	3.28e-01	81.1%	51.1%
3958841	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.53	43.0	3.66e-01	93.2%	100.0%
4971609	304.139.1.1 ↗	a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR	0.53	40.0	2.71e-01	87.8%	72.5%
3941292	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.51	38.0	3.40e-01	83.8%	54.5%
3510345	922.1.1.0 ↗	few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat	0.51	31.0	3.61e-01	85.1%	97.8%
3883228	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	37.0	3.38e-01	82.4%	61.8%

D4 medium residues 130-166_734-841

PDB

Domain cluster: representative

D5 medium residues 185-224_410-437

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jscA00	2.30.30.110	Mainly Beta › Roll › SH3 type barrels. ›	0.52	37.0	3.30e-01	75.0%	65.6%

D6 medium residues 366-409_438-466

PDB

Domain cluster: representative

D7 medium residues 564-711

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3386552	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.51	24.0	3.42e-01	88.5%	94.3%