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NC_048106.1__YP_009816358.1__HOU61_gp001__00001

Bact-Vir

NC_048106.1__YP_009816358.1__HOU61_gp001__00001

Identity

Accession:
NC_048106 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aokuangvirus› Synechococcus_phage_S-CBWM1

TaxID: 2053653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-176
PDB
Domain cluster: rep: NC_049498.1__YP_009887297.1__HYQ28_gp31__00031__D90-184
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04865.20 best Baseplate_J 45.1 1.60e-11 93.3% 80.0%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.76 54.0 5.87e-01 92.1% 88.0%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 50.0 4.80e-01 91.0% 71.6%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 55.0 5.46e-01 100.0% 92.6%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 55.0 5.22e-01 100.0% 93.5%
6oauA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.61 51.0 4.65e-01 100.0% 68.9%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 45.0 4.30e-01 97.8% 67.6%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 52.0 4.92e-01 98.9% 91.7%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 44.0 4.07e-01 80.9% 65.6%
4nreA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 51.0 4.67e-01 98.9% 76.7%
5dmyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.68e-01 100.0% 76.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 4.25e-01 97.8% 72.4%
6orhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 43.0 4.02e-01 97.8% 61.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 49.0 4.50e-01 98.9% 75.0%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 3.98e-01 98.9% 74.1%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.13e-01 70.8% 61.4%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 3.59e-01 97.8% 50.4%
7vc6A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.18e-01 100.0% 68.1%
3eypA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 42.0 3.74e-01 97.8% 56.8%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 41.0 3.68e-01 97.8% 56.7%
4i3gA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.37e-01 100.0% 84.2%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 3.50e-01 70.8% 100.0%
4xjcF00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.54 47.0 3.87e-01 100.0% 55.6%
2b1xA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 45.0 3.19e-01 97.8% 59.4%
1rhfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 4.02e-01 100.0% 81.3%
3nqkA01 2.60.40.1740 Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) 0.53 45.0 3.98e-01 100.0% 76.6%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 45.0 3.37e-01 100.0% 76.2%
2x41A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.14e-01 100.0% 79.0%
3esmA00 2.60.40.2230 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein YcnI-like PF07987, DUF1775 0.51 44.0 3.92e-01 100.0% 84.8%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 40.0 3.37e-01 98.9% 47.6%
3fq4B01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.50 43.0 4.00e-01 98.9% 78.4%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.48e-01 100.0% 52.6%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 35.0 3.28e-01 74.2% 91.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977754 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.89 81.0 7.95e-01 100.0% 89.5%
4514735 1049.2.1.4 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.88 74.0 5.60e-01 100.0% 41.6%
3948566 1.16.1.4 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › T6SS_TssF 0.86 75.0 7.54e-01 100.0% 90.0%
1562394 1.1.8.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA 0.79 72.0 6.77e-01 100.0% 93.5%
3981035 1.1.8.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › T6SS_TssF 0.75 69.0 6.65e-01 100.0% 88.0%
4937495 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 58.0 5.17e-01 100.0% 63.8%
4936752 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 53.0 5.30e-01 93.3% 84.3%
3265100 1.1.7.90 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.66 55.0 5.12e-01 92.1% 83.5%
3195396 11.1.1.911 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 0.66 59.0 5.06e-01 100.0% 64.8%
4014752 11.1.1.911 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 0.66 59.0 4.91e-01 100.0% 63.9%
3735482 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 58.0 5.02e-01 100.0% 75.0%
3251206 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 53.0 4.76e-01 100.0% 64.0%
3786265 11.1.1.1187 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7076 0.65 52.0 4.80e-01 96.6% 66.7%
5054836 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 54.0 5.00e-01 93.3% 85.2%
3961825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 48.0 4.61e-01 94.4% 68.6%
3813325 11.1.1.911 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 0.64 56.0 4.69e-01 100.0% 65.6%
3828376 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.64 47.0 4.13e-01 77.5% 94.6%
3267872 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 50.0 4.44e-01 92.1% 59.2%
3991328 11.1.1.414 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.63 55.0 4.52e-01 100.0% 64.1%
3434465 1.1.7.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.62 51.0 4.61e-01 88.8% 83.3%
3203720 11.1.1.911 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28381 0.62 55.0 4.78e-01 100.0% 77.1%
3894765 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.62 55.0 4.87e-01 100.0% 70.0%
3584141 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 4.31e-01 100.0% 49.4%
1557261 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 45.0 4.23e-01 97.8% 64.0%
5013572 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 41.0 3.99e-01 100.0% 63.0%
5044402 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.84e-01 100.0% 80.0%
171095 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.59 44.0 4.29e-01 96.6% 73.2%
3543523 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.59 51.0 4.45e-01 100.0% 63.6%
2515137 10.32.1.86 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C_2 0.59 44.0 3.92e-01 97.8% 55.0%
5070509 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.64e-01 100.0% 74.2%
3429784 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.58 50.0 4.24e-01 100.0% 83.7%
5032209 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.44e-01 98.9% 82.3%
3401798 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.57 49.0 4.54e-01 100.0% 75.8%
3729773 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.22e-01 100.0% 85.5%
5062163 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.56 48.0 4.35e-01 100.0% 71.5%
3267043 11.1.1.63 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha 0.56 48.0 4.14e-01 100.0% 60.7%
3693056 11.1.1.964 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26174 0.56 48.0 4.09e-01 100.0% 81.2%
3809400 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.56 48.0 3.37e-01 100.0% 28.9%
3828636 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 45.0 3.97e-01 91.0% 60.7%
5049677 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 49.0 4.36e-01 100.0% 90.8%
3830721 207.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3 0.55 47.0 3.04e-01 100.0% 28.9%
4340352 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.08e-01 98.9% 67.0%
3593621 10.15.1.1 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.53 35.0 3.19e-01 100.0% 50.0%
5041635 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.05e-01 100.0% 82.4%
4382198 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.52 37.0 3.25e-01 74.2% 99.3%
4958572 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.51 36.0 3.20e-01 73.0% 97.0%
3282461 11.1.5.28 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF1775 0.51 44.0 3.74e-01 100.0% 73.1%
4997108 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.71e-01 96.6% 57.9%
3604221 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.51 43.0 3.80e-01 100.0% 71.0%
3270461 10.34.1.1 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N 0.51 36.0 3.60e-01 98.9% 73.3%
D2 high residues 293-378_853-896
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 28.0 2.93e-01 96.9% 48.3%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 38.0 3.80e-01 73.8% 88.7%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.50 32.0 3.54e-01 86.2% 80.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943567 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.81 61.0 6.85e-01 87.7% 100.0%
5002740 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.80 65.0 7.03e-01 90.0% 99.1%
5004557 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.80 65.0 7.06e-01 89.2% 100.0%
3946544 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.75 58.0 6.40e-01 93.1% 100.0%
3276498 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 30.0 2.13e-01 100.0% 15.6%
4011995 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.54 33.0 3.18e-01 96.2% 50.6%
4412405 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.54 31.0 3.30e-01 99.2% 62.6%
D3 high residues 394-420_559-655
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.78 32.0 5.08e-01 84.7% 100.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 25.0 3.23e-01 94.4% 76.1%
D4 high residues 427-524_538-553
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cq0A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 28.0 2.97e-01 98.2% 57.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038126 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 25.0 2.92e-01 92.1% 64.0%
4377115 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.51 46.0 2.62e-01 96.5% 11.8%
D5 medium residues 14-85
PDB
Domain cluster: rep: OP053362.1__UYE97298.1__X__00133__D14-85
D6 medium residues 192-289
PDB
D7 medium residues 525-537_682-736
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 38.0 2.91e-01 73.5% 71.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595471 317.1.1.0 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.53 38.0 2.81e-01 77.9% 70.0%
4801459 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.53 28.0 2.78e-01 100.0% 46.7%
D8 medium residues 737-798
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 35.0 3.44e-01 79.0% 51.5%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 39.0 3.85e-01 77.4% 65.2%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 42.0 2.87e-01 82.3% 39.6%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 43.0 3.59e-01 82.3% 72.2%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.69e-01 87.1% 96.1%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 2.80e-01 88.7% 38.8%
2o34A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.54 37.0 2.53e-01 72.6% 43.4%
3dbaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 45.0 3.40e-01 100.0% 95.9%
4irzA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.54 43.0 2.61e-01 90.3% 28.9%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.54 41.0 3.47e-01 83.9% 52.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 39.0 2.53e-01 80.6% 91.8%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 37.0 3.12e-01 74.2% 80.2%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 3.18e-01 77.4% 47.4%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 42.0 3.78e-01 90.3% 76.7%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 2.85e-01 98.4% 89.8%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.74e-01 77.4% 74.2%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 40.0 2.55e-01 88.7% 50.9%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 3.62e-01 91.9% 97.0%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.64e-01 98.4% 95.5%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.28e-01 82.3% 92.6%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.51 35.0 3.01e-01 72.6% 75.0%
3mcpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.51e-01 93.5% 96.4%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.82e-01 100.0% 80.3%
3dwlA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 43.0 3.57e-01 100.0% 83.9%
3js6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 3.51e-01 98.4% 100.0%
3c0bA02 3.30.420.190 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › conserved archaeal protein q6m145 0.50 41.0 2.98e-01 100.0% 89.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 39.0 3.50e-01 85.5% 97.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281433 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.64 44.0 3.97e-01 74.2% 51.8%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 40.0 3.18e-01 75.8% 31.5%
5082741 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 41.0 4.04e-01 75.8% 64.3%
3940654 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 49.0 3.39e-01 91.9% 71.6%
3221272 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 52.0 3.53e-01 100.0% 82.0%
3506485 11.1.6.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.59 44.0 3.48e-01 82.3% 95.7%
3819824 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 44.0 2.91e-01 79.0% 26.7%
4390149 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.57 47.0 3.34e-01 96.8% 43.6%
3500664 11.1.1.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Motile_Sperm 0.57 39.0 3.25e-01 74.2% 65.8%
3202763 3887.1.1.0 ↗ a+b two layers › Yeast killer toxin-like › Yeast killer toxin-like › Yeast killer toxin-like 0.56 44.0 3.81e-01 90.3% 72.7%
3204303 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.56 48.0 3.33e-01 96.8% 91.0%
3958064 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 4.01e-01 98.4% 80.9%
3536274 220.1.1.55 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SYCP2_SLD 0.55 43.0 3.49e-01 85.5% 50.0%
3241453 2484.1.1.233 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 0.55 46.0 2.98e-01 96.8% 53.3%
3627791 5.1.4.94 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.55 49.0 3.11e-01 100.0% 84.4%
3404654 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.49e-01 95.2% 67.1%
4562403 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.54 43.0 4.10e-01 88.7% 76.0%
3693957 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 41.0 2.89e-01 82.3% 26.2%
4014627 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.54 41.0 3.27e-01 85.5% 60.7%
5009671 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.53 37.0 2.96e-01 74.2% 74.1%
4889001 5.1.4.280 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st 0.53 39.0 2.49e-01 80.6% 84.3%
3249410 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.70e-01 77.4% 88.4%
4405955 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.52 41.0 3.83e-01 87.1% 73.8%
3613385 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.52 40.0 3.21e-01 83.9% 48.0%
3593930 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.24e-01 83.9% 50.0%
4643976 101.1.2.654 ↗ alpha arrays › HTH › HTH › winged helix domain › RPA 0.52 36.0 2.76e-01 75.8% 61.2%
4211750 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 45.0 3.33e-01 100.0% 60.6%
3949006 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.52 41.0 2.65e-01 88.7% 28.2%
4008223 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 35.0 2.95e-01 71.0% 81.8%
4513290 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.51 42.0 3.25e-01 96.8% 54.8%
4679435 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.51 43.0 3.37e-01 98.4% 55.2%
3933994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.14e-01 83.9% 89.6%
None — 0.51 44.0 2.52e-01 100.0% 12.9%
4107728 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.51 44.0 3.32e-01 100.0% 56.9%
5046024 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.50 42.0 3.20e-01 96.8% 55.6%
3922803 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.01e-01 83.9% 73.3%
4442902 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.50 42.0 3.42e-01 96.8% 88.0%