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NC_048108.1__YP_009816559.1__HOU63_gp03__00003

Bact-Vir

NC_048108.1__YP_009816559.1__HOU63_gp03__00003

Identity

Accession:
NC_048108 ↗
Kingdom:
phage

Quality

64.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Berlinvirus› Yersinia_phage_PYPS50

TaxID: 2321391

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-111
PDB
D2 high residues 131-218
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.72 41.0 4.80e-01 95.5% 80.3%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.64 41.0 4.24e-01 75.0% 69.0%
3c1aA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 41.0 3.47e-01 72.7% 64.8%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.58 39.0 3.67e-01 70.5% 55.6%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.57 37.0 3.04e-01 75.0% 33.7%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.33e-01 98.9% 43.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.87e-01 88.6% 23.2%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.56 46.0 3.61e-01 89.8% 53.8%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 48.0 3.59e-01 97.7% 47.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 34.0 3.55e-01 95.5% 67.5%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.55 47.0 3.36e-01 100.0% 54.3%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.72e-01 92.0% 55.7%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.90e-01 95.5% 69.3%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 45.0 3.61e-01 95.5% 56.9%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.53 47.0 4.38e-01 100.0% 92.8%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.08e-01 73.9% 72.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.73e-01 94.3% 94.9%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.51 43.0 3.81e-01 89.8% 65.6%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.51 45.0 4.04e-01 95.5% 98.3%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 3.83e-01 100.0% 78.6%
1celA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.50 43.0 2.79e-01 96.6% 54.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033743 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.76 65.0 6.65e-01 92.0% 100.0%
4033339 520.1.1.2 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 0.76 65.0 6.66e-01 92.0% 100.0%
4464751 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.71 41.0 3.30e-01 92.0% 30.0%
4023269 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.69 42.0 3.92e-01 73.9% 49.1%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.67 40.0 3.50e-01 93.2% 39.3%
3972316 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.65 36.0 4.14e-01 73.9% 73.8%
3229101 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.61 44.0 4.76e-01 89.8% 90.4%
4947399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 3.78e-01 71.6% 58.9%
4122483 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.60 44.0 3.66e-01 77.3% 94.8%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 37.0 2.47e-01 72.7% 16.4%
3979195 274.1.1.35 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.60 43.0 3.82e-01 75.0% 52.8%
165398 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.57 49.0 3.09e-01 95.5% 88.8%
4015961 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.92e-01 100.0% 31.8%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.49e-01 95.5% 70.6%
5002677 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 42.0 3.57e-01 90.9% 70.3%
4147605 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.50 38.0 2.85e-01 84.1% 81.2%