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NC_048119.1__YP_009817307.1__HOU74_gp42__00042

Bact-Vir

NC_048119.1__YP_009817307.1__HOU74_gp42__00042

Identity

Accession:
NC_048119 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-41
PDB
Domain cluster: representative
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nydA02 2.20.28.300 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.74 55.0 5.53e-01 100.0% 82.9%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.73 62.0 4.58e-01 100.0% 43.9%
5fmvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 59.0 4.72e-01 100.0% 53.6%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 59.0 4.70e-01 100.0% 48.8%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.68 55.0 3.79e-01 100.0% 37.5%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 55.0 4.57e-01 100.0% 50.0%
1z3aA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.68 55.0 3.82e-01 100.0% 71.8%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.48e-01 100.0% 48.4%
3arxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.25e-01 100.0% 37.8%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.67 57.0 3.96e-01 100.0% 29.5%
2nx8A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 53.0 3.69e-01 100.0% 66.7%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 57.0 4.04e-01 100.0% 33.3%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.67 58.0 4.12e-01 100.0% 83.9%
1iamA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 56.0 4.28e-01 100.0% 44.1%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 54.0 4.11e-01 100.0% 50.9%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 56.0 4.46e-01 100.0% 55.2%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.66 52.0 4.43e-01 100.0% 100.0%
2cspA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 58.0 4.36e-01 100.0% 44.9%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 56.0 4.07e-01 100.0% 46.1%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 53.0 3.90e-01 100.0% 35.2%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 55.0 4.37e-01 100.0% 52.3%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 54.0 4.08e-01 100.0% 46.3%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.65 54.0 4.10e-01 100.0% 44.8%
1ollA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.26e-01 100.0% 49.5%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.65 52.0 3.92e-01 100.0% 37.6%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 54.0 3.73e-01 100.0% 27.9%
1ne6A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 55.0 3.97e-01 100.0% 32.8%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.64 52.0 3.13e-01 100.0% 25.8%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 3.98e-01 100.0% 47.3%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.64 54.0 3.76e-01 100.0% 54.6%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 56.0 3.84e-01 100.0% 29.0%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.64 52.0 4.09e-01 100.0% 46.9%
2q3xA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.64 55.0 3.81e-01 100.0% 33.1%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.64 53.0 3.50e-01 100.0% 45.7%
1gttA01 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.64 53.0 3.42e-01 100.0% 31.3%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 55.0 3.86e-01 100.0% 31.0%
2xfdA00 2.60.60.40 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.63 55.0 4.02e-01 100.0% 36.7%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 53.0 3.72e-01 100.0% 37.0%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 51.0 3.94e-01 100.0% 52.4%
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 4.11e-01 100.0% 61.3%
2pkaA00 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 52.0 4.26e-01 100.0% 52.5%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 3.76e-01 100.0% 41.1%
5yl1A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 3.25e-01 92.5% 70.2%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.69e-01 100.0% 36.2%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 52.0 3.71e-01 100.0% 33.1%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.60 50.0 3.72e-01 100.0% 38.1%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 50.0 3.83e-01 97.5% 86.7%
2vmhA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.58 48.0 3.39e-01 100.0% 29.3%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.43e-01 100.0% 45.3%
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 3.18e-01 100.0% 38.9%
2p8eA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 47.0 2.90e-01 100.0% 32.7%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.07e-01 95.0% 50.9%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.60e-01 100.0% 44.6%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.12e-01 100.0% 50.0%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.17e-01 100.0% 33.3%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 43.0 3.11e-01 100.0% 28.8%
2dymC01 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 47.0 3.53e-01 100.0% 46.5%
3fdjA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.54 43.0 4.44e-01 95.0% 100.0%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 2.92e-01 100.0% 28.4%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.52 41.0 4.15e-01 95.0% 100.0%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.00e-01 100.0% 43.8%
2hjeA02 2.20.20.100 Mainly Beta › Single Sheet › Anthopleurin-A › LuxQ periplasmic domain, C-terminal subdomain 0.52 46.0 4.18e-01 100.0% 96.3%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 40.0 3.29e-01 97.5% 79.1%
2rczA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 42.0 3.81e-01 97.5% 98.3%
5fr6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.46e-01 97.5% 69.9%
2e7yB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 37.0 2.42e-01 97.5% 95.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4186857 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.89 80.0 8.02e-01 100.0% 97.5%
5070413 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.88 73.0 7.35e-01 92.5% 90.0%
4531584 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.82 70.0 7.05e-01 100.0% 100.0%
3297748 4076.1.1.2 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.79 69.0 6.16e-01 100.0% 70.9%
3920661 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.71 60.0 4.46e-01 100.0% 47.6%
3888595 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.69 60.0 4.29e-01 100.0% 41.7%
3738248 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.68 56.0 4.68e-01 97.5% 52.0%
3606070 7032.1.1.0 a+b two layers › Paratox › Paratox › Paratox 0.68 56.0 4.94e-01 100.0% 63.3%
3778406 11.1.1.946 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2, Ig_3 0.67 57.0 3.69e-01 100.0% 24.2%
3973531 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 57.0 3.96e-01 100.0% 35.7%
3856234 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.67 57.0 3.57e-01 100.0% 20.0%
3756439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 57.0 3.97e-01 100.0% 32.1%
3219320 11.1.1.859 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_3 0.65 55.0 3.46e-01 100.0% 26.3%
3213885 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.65 55.0 4.12e-01 100.0% 57.1%
4943994 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.18e-01 100.0% 56.0%
3244813 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.65 54.0 3.82e-01 100.0% 44.4%
5008037 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 51.0 3.63e-01 90.0% 96.8%
4340143 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 50.0 4.47e-01 100.0% 89.9%
184942 10.2.1.56 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N 0.64 54.0 3.76e-01 100.0% 54.6%
2995054 10.2.1.54 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.64 53.0 3.41e-01 100.0% 39.6%
2995198 10.2.1.54 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.64 53.0 3.50e-01 100.0% 46.3%
3525968 11.1.1.102 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD 0.64 51.0 3.94e-01 100.0% 52.4%
3668018 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.90e-01 100.0% 72.7%
4974394 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.25e-01 92.5% 60.0%
4968660 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.63 51.0 3.80e-01 100.0% 79.2%
2573463 302.3.1.0 a+b two layers › Reverse ferredoxin › a+b domain in low-molecular-weight S-layer protein › a+b domain in low-molecular-weight S-layer protein 0.62 46.0 3.93e-01 100.0% 46.1%
4850052 10.2.1.54 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.61 49.0 3.26e-01 100.0% 44.3%
3969157 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.60 44.0 2.98e-01 82.5% 57.6%
3251081 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 51.0 3.52e-01 100.0% 31.0%
3193395 11.1.1.646 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.59 47.0 3.38e-01 100.0% 48.3%
3672534 11.1.1.855 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 0.59 49.0 3.35e-01 100.0% 32.5%
3170078 11.1.1.646 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.59 46.0 3.39e-01 100.0% 51.1%
4540300 221.1.1.43 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF3337 0.58 45.0 3.54e-01 100.0% 38.7%
4668667 5095.1.1.1 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.58 47.0 3.28e-01 100.0% 34.2%
3806728 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 44.0 3.62e-01 100.0% 42.2%
4958377 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.57 44.0 4.28e-01 100.0% 81.2%
3739999 11.1.1.646 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.57 48.0 3.32e-01 100.0% 46.7%
3740915 221.1.1.43 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF3337 0.57 43.0 3.49e-01 100.0% 40.0%
4811774 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.56 41.0 4.05e-01 100.0% 74.0%
4020684 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.56 44.0 4.00e-01 100.0% 65.5%
3318871 221.1.1.60 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_5 0.56 38.0 3.28e-01 72.5% 81.5%
3590615 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.55 45.0 2.75e-01 100.0% 82.5%
4940593 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 40.0 2.87e-01 100.0% 32.9%
4981878 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 47.0 3.90e-01 100.0% 57.1%
3469827 221.1.1.31 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › NLE 0.53 41.0 3.34e-01 95.0% 74.4%
3170674 221.1.1.43 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF3337 0.52 45.0 3.59e-01 97.5% 60.0%
3275839 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 43.0 3.35e-01 100.0% 42.1%
3789426 221.1.1.43 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF3337 0.52 43.0 3.20e-01 97.5% 81.4%