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NC_048120.1__YP_009817369.1__HOU75_gp49__00049

Bact-Vir

NC_048120.1__YP_009817369.1__HOU75_gp49__00049

Identity

Accession:
NC_048120 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Phimunavirus› Pectobacterium_phage_Zenivior

TaxID: 2489635

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-108
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.67 46.0 4.28e-01 76.2% 56.1%
1vqrD00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.67 46.0 3.04e-01 71.4% 19.9%
5j6bD01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.67 57.0 3.72e-01 98.4% 70.7%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 39.0 4.26e-01 74.6% 83.0%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 44.0 3.79e-01 77.8% 77.5%
2dt7B01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.58 39.0 4.09e-01 82.5% 74.6%
3eo8A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 48.0 3.39e-01 96.8% 69.9%
2y51A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 48.0 3.18e-01 100.0% 65.9%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.57 48.0 3.80e-01 100.0% 93.1%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.56 40.0 3.47e-01 74.6% 94.1%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.56 45.0 4.03e-01 93.7% 83.7%
7sf7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 46.0 3.14e-01 100.0% 67.2%
3wgtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 41.0 2.87e-01 79.4% 58.1%
1ltmA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 46.0 3.40e-01 96.8% 63.0%
4nmyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 40.0 2.84e-01 79.4% 50.8%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 34.0 3.46e-01 73.0% 65.6%
1dvpA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 39.0 3.22e-01 90.5% 70.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4597634 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.72 47.0 4.40e-01 71.4% 53.8%
3968402 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.68 46.0 4.84e-01 76.2% 80.0%
4230575 3355.1.1.16 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC 0.63 52.0 3.21e-01 100.0% 70.3%
5077964 3355.1.1.41 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DUF401 0.62 48.0 3.00e-01 85.7% 56.2%
3320255 605.3.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.61 42.0 4.47e-01 76.2% 90.0%
3256686 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.58 41.0 4.34e-01 76.2% 87.3%
5052262 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 41.0 3.93e-01 76.2% 73.3%
3554931 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.39e-01 77.8% 94.4%
8015 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.56 40.0 3.47e-01 74.6% 94.1%
3712974 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.56 38.0 3.49e-01 73.0% 52.9%
5024001 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.56 41.0 3.59e-01 81.0% 51.0%
3503552 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 46.0 3.70e-01 100.0% 89.9%
4981960 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.54 41.0 4.25e-01 88.9% 91.7%
3255954 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.54 38.0 3.82e-01 77.8% 78.5%
5032962 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.53 41.0 4.12e-01 88.9% 85.9%
3350920 109.4.1.1314 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_11 0.51 43.0 3.44e-01 100.0% 81.4%
5051432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 2.94e-01 98.4% 76.2%