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NC_048123.1__YP_009817556.1__HOU78_gp11__00011

Bact-Vir

Identity

Accession:: NC_048123 ↗
Kingdom:: phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Cyclitvirus› Vibrio_phage_1.204.O._10N.222.46.F12

TaxID: 1881263

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-158

PDB

Domain cluster: rep: MW980062.1__QXV73670.1__X__00041__D67-196

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cxbA03	1.10.1740.30	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain	0.73	37.0	4.41e-01	79.3%	71.6%
7shlA02	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.71	58.0	5.84e-01	86.8%	100.0%
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.65	45.0	4.44e-01	71.9%	97.7%
2wzkA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.65	53.0	5.51e-01	88.4%	100.0%
1wp7A00	1.10.287.770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like	0.64	31.0	4.14e-01	82.6%	85.9%
4a64A02	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.64	52.0	5.36e-01	86.8%	98.3%
4v1gA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.62	37.0	4.35e-01	84.3%	84.7%
2qf9A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	33.0	3.10e-01	72.7%	42.3%
3edvA02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	47.0	4.09e-01	87.6%	96.2%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.56	36.0	3.93e-01	86.0%	80.4%
2c5uA02	1.10.3550.20	Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold ›	0.56	45.0	4.45e-01	98.3%	79.4%
2a0uB01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.56	45.0	4.11e-01	86.8%	76.9%
3fhnA01	6.10.280.210	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A	0.55	49.0	4.29e-01	99.2%	68.5%
2gfpA00	1.20.1720.10	Mainly Alpha › Up-down Bundle › Multidrug resistance protein D › Multidrug resistance protein D	0.54	47.0	3.35e-01	95.9%	73.3%
1owlA02	1.25.40.80	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	33.0	3.35e-01	79.3%	60.2%
2vkjA00	1.20.58.2030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	35.0	3.72e-01	80.2%	74.5%
5jrcA00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	45.0	4.01e-01	96.7%	89.8%
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.52	31.0	3.64e-01	79.3%	88.3%
2yfaA02	1.20.1440.210	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.51	40.0	4.09e-01	86.0%	86.2%
2jbwA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.51	33.0	3.60e-01	72.7%	77.7%
1j1jA02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.51	33.0	3.78e-01	85.1%	92.9%
1pbwB00	1.10.555.10	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein	0.50	40.0	3.55e-01	89.3%	69.2%

ECOD (31)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3686422	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.81	55.0	5.97e-01	89.3%	81.0%
5079114	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.76	59.0	5.13e-01	81.0%	86.7%
3601047	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.72	63.0	4.49e-01	95.9%	34.9%
4653062	604.4.1.0 ↗	alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP	0.71	55.0	5.76e-01	95.0%	88.2%
3939318	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.70	58.0	4.10e-01	90.1%	34.1%
4017353	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.69	58.0	3.88e-01	90.1%	30.4%
3836328	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.68	59.0	3.95e-01	93.4%	28.4%
3269613	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.68	59.0	3.94e-01	93.4%	28.5%
3997069	109.4.1.1124 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ANAPC2	0.68	62.0	4.46e-01	100.0%	78.0%
4017175	101.1.2.312 ↗	alpha arrays › HTH › HTH › winged helix domain › MSC	0.65	45.0	3.59e-01	71.1%	43.7%
3802176	604.16.1.3 ↗	alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › Vwaint	0.61	39.0	4.20e-01	75.2%	75.2%
3744687	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.59	43.0	3.42e-01	75.2%	37.6%
3273939	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.59	38.0	4.06e-01	81.0%	74.3%
3684023	109.4.1.493 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2	0.59	47.0	3.03e-01	95.9%	18.6%
3592663	604.22.1.0 ↗	alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain	0.58	39.0	4.19e-01	71.1%	82.0%
3954534	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	43.0	2.92e-01	79.3%	85.1%
4998807	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.57	44.0	3.08e-01	82.6%	81.9%
5021529	604.39.1.9 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1	0.56	42.0	3.44e-01	86.0%	44.3%
3526459	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.56	41.0	3.29e-01	75.2%	63.0%
4972685	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.55	41.0	3.34e-01	78.5%	70.7%
3460830	604.16.1.3 ↗	alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › Vwaint	0.55	38.0	4.00e-01	78.5%	81.0%
3440212	601.18.1.13 ↗	alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Vwaint	0.54	39.0	4.16e-01	76.0%	88.6%
4190432	1197.1.1.1 ↗	alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf	0.54	45.0	3.98e-01	93.4%	99.5%
5073361	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.53	40.0	3.45e-01	81.8%	92.5%
5037690	5058.1.1.16 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1	0.52	41.0	3.70e-01	84.3%	91.5%
4942070	5050.1.1.87 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › LPG_synthase_TM	0.51	40.0	3.19e-01	83.5%	43.6%
3829877	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	41.0	3.58e-01	87.6%	63.5%
4979297	7064.1.1.1 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1	0.51	44.0	3.87e-01	95.9%	72.1%
4999686	604.12.1.1 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT	0.51	30.0	3.72e-01	79.3%	96.0%
3813462	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	41.0	3.96e-01	86.8%	84.4%
3773235	604.12.1.1 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT	0.50	34.0	3.83e-01	93.4%	91.1%

D2 high residues 165-241

PDB

D3 high residues 269-342

PDB

D4 high residues 379-463

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qsgA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.65	55.0	4.99e-01	92.9%	100.0%
4wr4A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.64	43.0	4.09e-01	88.2%	57.1%
1owlA02	1.25.40.80	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.62	45.0	4.03e-01	77.6%	60.2%
3bbyA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.61	42.0	3.80e-01	82.4%	52.1%
3lszA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	45.0	4.00e-01	81.2%	71.2%
2yvkA01	1.20.120.420	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1	0.59	51.0	4.29e-01	97.6%	68.9%
1kgqA01	1.10.166.10	Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain	0.58	44.0	4.74e-01	81.2%	100.0%
1z9eA00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.57	41.0	4.22e-01	85.9%	79.5%
2ppqA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.56	41.0	3.20e-01	81.2%	73.8%
4m7cB00	1.25.40.210	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain	0.53	45.0	3.54e-01	98.8%	88.4%
3amlA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.52	41.0	2.60e-01	85.9%	31.5%
4dvyP03	1.20.120.1270	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CagA exotoxin domain III	0.51	39.0	3.21e-01	91.8%	42.7%
3ocjA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	44.0	3.07e-01	97.6%	72.3%
2b1eA03	1.10.357.60	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.51	44.0	3.61e-01	100.0%	73.8%
2lqgA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	40.0	3.49e-01	87.1%	74.6%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.51	39.0	4.14e-01	95.3%	96.0%
1nafA02	1.20.58.160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	40.0	4.06e-01	89.4%	91.8%
4pjjA04	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.51	37.0	3.33e-01	88.2%	53.6%
2vxgA02	1.10.220.100	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1	0.51	39.0	3.92e-01	88.2%	83.5%
3kwlA02	1.10.1060.20	Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 ›	0.51	38.0	3.54e-01	82.4%	71.7%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3248307	109.4.1.1561 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_LAA1_C	0.66	50.0	3.82e-01	80.0%	35.4%
4014231	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	46.0	2.61e-01	78.8%	10.3%
3631631	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	45.0	3.09e-01	77.6%	26.7%
4083042	507.1.1.0 ↗	alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related	0.60	43.0	3.93e-01	95.3%	54.2%
3375741	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	42.0	3.90e-01	78.8%	60.0%
3639687	145.1.1.0 ↗	alpha arrays › F-box domain › F-box domain › F-box domain	0.57	42.0	3.69e-01	89.4%	52.8%
5054547	140.1.1.7 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2	0.55	38.0	3.46e-01	76.5%	50.4%
3578143	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	45.0	3.57e-01	92.9%	58.9%
3777294	109.4.1.953 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_1st	0.54	47.0	3.29e-01	97.6%	35.4%
3361553	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	40.0	4.03e-01	91.8%	80.0%
3953081	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.53	46.0	3.02e-01	97.6%	32.5%
3718498	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.53	44.0	4.37e-01	95.3%	86.7%
4027713	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	41.0	4.12e-01	92.9%	83.3%
3591989	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.51	39.0	2.97e-01	84.7%	73.9%
5024094	3076.1.1.1 ↗	alpha arrays › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › CitG	0.51	39.0	2.77e-01	84.7%	85.3%
3329196	604.6.1.1 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT	0.51	41.0	3.93e-01	89.4%	80.0%
3838930	187.2.1.1 ↗	alpha arrays › alpha-helical ferredoxin-like › Hypothetical protein HPAG1_0444 helical domain › Hypothetical protein HPAG1_0444 helical domain › DUF5644	0.51	38.0	3.56e-01	82.4%	72.7%

D5 high residues 468-540

PDB

D6 medium residues 547-670

PDB

D7 medium residues 671-720

PDB

D8 medium residues 721-913

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bkhA02	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.61	55.0	5.64e-01	98.4%	99.5%
3nhiA02	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.52	34.0	3.77e-01	70.5%	84.9%
7rkxR01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	35.0	3.23e-01	70.5%	90.6%
3f4mA00	1.20.1440.160	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like	0.50	31.0	3.40e-01	96.9%	73.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4132757	235.1.1.0 ↗	a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like	0.68	57.0	6.03e-01	96.9%	97.7%
3202405	235.1.1.0 ↗	a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like	0.68	60.0	6.14e-01	98.4%	97.8%