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NC_048125.1__YP_009817714.1__HOU80_gp73__00029

Bact-Vir

NC_048125.1__YP_009817714.1__HOU80_gp73__00029

Identity

Accession:
NC_048125 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Mukerjeevirus› Vibrio_phage_1.261.O._10N.286.51.A7

TaxID: 1881237

Cluster

View cluster (60 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58_177-254
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.77 37.0 5.42e-01 92.5% 98.5%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 34.0 4.07e-01 85.8% 74.2%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 41.0 3.42e-01 70.9% 69.8%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 37.0 4.22e-01 83.6% 90.7%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 36.0 3.91e-01 84.3% 77.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 37.0 4.31e-01 82.8% 97.8%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 37.0 3.58e-01 77.6% 63.5%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 36.0 3.14e-01 72.4% 46.9%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.51 29.0 3.11e-01 82.8% 62.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936733 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.80 37.0 3.96e-01 92.5% 50.8%
4928042 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.69 45.0 5.53e-01 78.4% 100.0%
3272556 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.56 33.0 2.88e-01 91.0% 39.0%
3923539 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.56 37.0 3.60e-01 84.3% 61.4%
3184685 109.4.1.177 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 0.53 37.0 2.70e-01 90.3% 27.1%
5072449 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.53 32.0 3.82e-01 83.6% 90.0%
4982284 5060.1.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C 0.52 37.0 3.13e-01 82.1% 44.1%
3290592 191.1.1.64 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › DUF4254 0.52 37.0 3.79e-01 82.1% 75.4%
3632463 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.52 33.0 3.46e-01 99.3% 69.2%
3740645 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.51 32.0 3.82e-01 82.8% 93.3%
4023679 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.50 36.0 3.66e-01 85.8% 75.4%
D2 high residues 61-173
PDB