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NC_048125.1__YP_009817731.1__HOU80_gp56__00046

Bact-Vir

NC_048125.1__YP_009817731.1__HOU80_gp56__00046

Identity

Accession:
NC_048125 ↗
Kingdom:
phage

Quality

39.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Mukerjeevirus› Vibrio_phage_1.261.O._10N.286.51.A7

TaxID: 1881237

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.89 70.0 7.60e-01 83.3% 97.8%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.82 63.0 6.32e-01 83.3% 81.8%
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.81 60.0 4.99e-01 81.5% 45.7%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 46.0 4.35e-01 94.4% 48.4%
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.81 60.0 6.25e-01 85.2% 87.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.77 61.0 5.28e-01 87.0% 90.5%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.75 53.0 4.62e-01 74.1% 53.2%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 47.0 3.71e-01 100.0% 31.8%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.74 63.0 4.41e-01 96.3% 40.1%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.73 46.0 4.73e-01 70.4% 68.6%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.72 58.0 4.93e-01 88.9% 91.0%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.71 56.0 4.20e-01 87.0% 72.6%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.69 49.0 4.33e-01 100.0% 52.6%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 53.0 4.12e-01 83.3% 97.1%
4k3bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.66 46.0 3.92e-01 72.2% 63.1%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 52.0 4.22e-01 87.0% 100.0%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.65 50.0 4.50e-01 90.7% 97.5%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 49.0 3.97e-01 87.0% 92.5%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 56.0 4.60e-01 100.0% 84.2%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.62 46.0 3.78e-01 79.6% 63.5%
3h7lB02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 56.0 3.23e-01 100.0% 85.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 2.93e-01 75.9% 26.0%
1i24A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.58 40.0 2.93e-01 72.2% 39.4%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.58 39.0 3.19e-01 70.4% 37.3%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.57 47.0 3.62e-01 88.9% 81.6%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 36.0 2.94e-01 72.2% 56.3%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.98e-01 85.2% 36.3%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.50 45.0 4.52e-01 98.1% 100.0%
1q44A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 2.60e-01 94.4% 17.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3611122 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.95 88.0 8.81e-01 98.1% 96.4%
3943133 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.93 73.0 8.01e-01 83.3% 100.0%
4623858 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.92 70.0 7.65e-01 79.6% 95.6%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.92 65.0 6.74e-01 74.1% 80.0%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.92 68.0 7.39e-01 77.8% 93.3%
3266211 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.92 79.0 8.24e-01 94.4% 100.0%
5053068 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.91 62.0 7.05e-01 70.4% 95.0%
4433184 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.91 72.0 7.20e-01 83.3% 81.8%
3568558 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.90 71.0 6.85e-01 83.3% 75.0%
4260463 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.90 71.0 7.74e-01 83.3% 100.0%
3253259 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.90 64.0 7.25e-01 74.1% 100.0%
3261240 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.90 64.0 7.35e-01 74.1% 100.0%
3172891 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.89 66.0 6.82e-01 81.5% 84.0%
3271283 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.87 67.0 6.45e-01 81.5% 76.7%
3472431 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 60.0 6.79e-01 72.2% 97.5%
3797432 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 62.0 6.33e-01 77.8% 83.0%
3769015 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.84 62.0 6.44e-01 77.8% 88.0%
4649575 130.1.1.45 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.84 62.0 5.96e-01 81.5% 70.0%
3880529 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 69.0 6.44e-01 90.7% 73.8%
4241485 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.83 64.0 6.45e-01 83.3% 85.5%
4959048 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 63.0 6.59e-01 81.5% 90.0%
3390715 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.83 58.0 6.36e-01 74.1% 100.0%
3127 130.1.1.7 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris 0.83 63.0 6.36e-01 83.3% 83.3%
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 65.0 6.11e-01 87.0% 70.8%
3269634 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.82 74.0 7.14e-01 100.0% 96.7%
1826874 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.82 60.0 5.87e-01 79.6% 72.4%
3520581 130.1.1.8 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.81 59.0 6.39e-01 79.6% 93.3%
3252664 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.81 64.0 6.39e-01 87.0% 85.5%
3198528 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.81 61.0 6.14e-01 81.5% 80.0%
3190964 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.80 64.0 6.41e-01 87.0% 83.6%
3480954 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.80 58.0 6.28e-01 77.8% 100.0%
3191312 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.80 62.0 6.64e-01 87.0% 100.0%
3699818 130.1.1.8 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.80 58.0 6.21e-01 81.5% 93.3%
3813837 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.79 54.0 4.76e-01 70.4% 54.7%
3650342 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.77 63.0 6.45e-01 96.3% 100.0%
3391939 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.74 50.0 3.86e-01 70.4% 33.0%
4013599 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.73 64.0 3.98e-01 100.0% 25.7%
4386708 130.1.1.49 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF27388 0.73 58.0 5.15e-01 88.9% 61.3%
3995535 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 61.0 5.28e-01 90.7% 86.3%
3388513 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.72 54.0 5.54e-01 83.3% 88.0%
4127368 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.70 43.0 4.46e-01 96.3% 66.0%
3988632 507.1.1.0 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related 0.68 53.0 4.00e-01 85.2% 66.9%
3652408 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.66 54.0 4.44e-01 88.9% 86.3%
4169130 102.1.1.5 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_LFY 0.65 56.0 4.62e-01 100.0% 55.6%
5081366 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.65 51.0 3.55e-01 98.1% 27.9%
4408728 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.40e-01 94.4% 85.3%
4089654 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 51.0 4.07e-01 100.0% 89.5%
4029929 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 44.0 2.92e-01 90.7% 93.3%