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NC_048125.1__YP_009817754.1__HOU80_gp33__00069

Bact-Vir

NC_048125.1__YP_009817754.1__HOU80_gp33__00069

Identity

Accession:
NC_048125 ↗
Kingdom:
phage

Quality

68.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Mukerjeevirus› Vibrio_phage_1.261.O._10N.286.51.A7

TaxID: 1881237

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-100
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oyyA00 6.10.80.10 Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) 0.64 52.0 4.64e-01 100.0% 67.6%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.84e-01 88.6% 95.7%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 55.0 4.51e-01 100.0% 96.4%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.62 47.0 4.08e-01 100.0% 51.4%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 44.0 4.26e-01 88.6% 66.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 48.0 4.27e-01 100.0% 95.5%
2zshB00 1.10.10.1290 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transcriptional regulator DELLA, N-terminal domain 0.50 38.0 3.45e-01 81.8% 64.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3410150 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.89 80.0 7.43e-01 100.0% 92.7%
3560411 148.1.3.336 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Glyco_hydro_15 0.80 66.0 4.24e-01 95.5% 20.0%
3536537 110.1.1.34 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Glyco_hydro_15 0.80 67.0 4.30e-01 97.7% 20.0%
3864511 109.2.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 0.80 66.0 4.22e-01 95.5% 20.0%
3610517 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.78 67.0 6.18e-01 97.7% 79.3%
3222360 103.1.1.21 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.63 50.0 5.03e-01 90.9% 100.0%
4959119 518.1.1.1 ↗ alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N 0.62 48.0 4.18e-01 97.7% 57.5%
3659508 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.59 51.0 3.49e-01 97.7% 69.0%
5047333 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.13e-01 75.0% 50.0%
3279510 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.56 42.0 3.82e-01 81.8% 75.0%
3218211 102.1.1.32 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 0.56 43.0 3.99e-01 81.8% 67.3%
4971366 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.50e-01 81.8% 61.3%
3932988 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 36.0 3.44e-01 81.8% 61.8%