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YP_009817855.1

Arc-Vir

NC_048127__YP_009817855.1__HOU83-gp14__00014

Identity

Accession:
NC_048127 ↗
Protein ID:
YP_009817855.1 ↗
Kingdom:
archaea

Quality

77.6 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Deltalipothrixvirus› Sulfolobales_Beppu_filamentous_virus_3

TaxID: 2493124

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sqiA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 44.0 3.20e-01 77.8% 24.0%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.69 54.0 4.68e-01 92.1% 55.8%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.67 49.0 4.27e-01 77.8% 60.4%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 53.0 4.47e-01 96.8% 52.8%
4i0nA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.65 53.0 3.58e-01 93.7% 92.0%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.64 42.0 3.84e-01 73.0% 51.2%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.64 51.0 4.56e-01 87.3% 61.8%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.64 52.0 4.29e-01 92.1% 50.0%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.63 51.0 4.02e-01 90.5% 72.0%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.62 51.0 3.51e-01 93.7% 83.6%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 49.0 3.88e-01 88.9% 49.3%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 41.0 2.92e-01 73.0% 92.2%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 3.79e-01 77.8% 71.4%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 3.39e-01 82.5% 83.2%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 45.0 4.14e-01 88.9% 95.5%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 47.0 3.41e-01 90.5% 86.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 50.0 4.46e-01 96.8% 94.4%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 39.0 2.87e-01 77.8% 24.6%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.56 45.0 3.73e-01 88.9% 67.3%
5aq1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 46.0 3.09e-01 95.2% 60.6%
1vqzA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 46.0 4.12e-01 90.5% 90.9%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 45.0 3.59e-01 90.5% 98.5%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.59e-01 79.4% 67.3%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.56 44.0 3.96e-01 88.9% 79.1%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.55 43.0 3.04e-01 87.3% 30.7%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 43.0 3.39e-01 88.9% 73.8%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 43.0 2.78e-01 92.1% 18.5%
3bp1A02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 45.0 3.55e-01 93.7% 63.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.54 41.0 3.59e-01 85.7% 95.1%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.41e-01 100.0% 60.0%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 2.95e-01 82.5% 32.0%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.10e-01 90.5% 88.2%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.26e-01 81.0% 94.6%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.83e-01 96.8% 40.9%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 2.90e-01 100.0% 47.3%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.51 38.0 2.91e-01 82.5% 69.9%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 41.0 3.43e-01 93.7% 71.2%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.35e-01 79.4% 73.3%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 45.0 2.77e-01 100.0% 20.3%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.06e-01 79.4% 56.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001584 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.72 49.0 4.39e-01 82.5% 51.8%
4032422 5.1.2.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.71 48.0 3.06e-01 74.6% 14.5%
2418839 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.71 46.0 3.67e-01 81.0% 35.3%
3245132 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 51.0 4.02e-01 88.9% 39.2%
5001319 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.66 46.0 3.37e-01 73.0% 47.0%
5042040 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.65 43.0 3.16e-01 77.8% 25.3%
5008070 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 41.0 3.24e-01 73.0% 44.8%
4350765 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.59 43.0 2.64e-01 84.1% 12.9%
4666231 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.59 44.0 3.26e-01 82.5% 44.6%
4478659 3435.1.1.3 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › CENP-L 0.58 45.0 2.92e-01 85.7% 39.6%
4054004 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.58 46.0 4.18e-01 88.9% 96.6%
4144910 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.58 44.0 4.01e-01 82.5% 96.5%
4400677 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.57 44.0 4.03e-01 84.1% 96.5%
3391728 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.56 49.0 4.48e-01 96.8% 82.1%
3597513 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 3.92e-01 84.1% 80.0%
3745492 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.55 45.0 2.53e-01 95.2% 41.9%
3650904 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 39.0 3.45e-01 76.2% 67.4%
3261978 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.55 43.0 4.26e-01 87.3% 83.1%
3968468 4152.2.1.0 ↗ a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.54 40.0 3.84e-01 81.0% 100.0%
5078190 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 41.0 2.72e-01 82.5% 79.6%
3209816 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 39.0 3.12e-01 82.5% 52.7%
5081878 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 47.0 2.90e-01 98.4% 88.9%
3509551 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 39.0 3.60e-01 81.0% 71.8%
4411025 284.1.3.3 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.52 45.0 4.18e-01 100.0% 77.5%
3421076 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 43.0 2.74e-01 90.5% 24.6%
3877730 2484.1.1.5 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.52 44.0 3.03e-01 96.8% 65.7%
4943640 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 41.0 3.24e-01 87.3% 57.9%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.46e-01 88.9% 95.5%
3834577 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 3.49e-01 95.2% 100.0%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 43.0 3.50e-01 100.0% 94.1%
4989633 3891.1.1.0 ↗ a+b two layers › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a › Archaea-specific ribosomal protein L46a 0.51 41.0 3.81e-01 87.3% 77.5%
3413411 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.51 41.0 2.57e-01 100.0% 62.7%
5064060 896.1.1.4 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.50 40.0 3.91e-01 100.0% 77.1%
5007504 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.50 44.0 2.96e-01 100.0% 43.4%
3272379 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.50 39.0 3.62e-01 90.5% 87.6%
4981192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 44.0 2.95e-01 98.4% 96.1%
4982659 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.50 44.0 2.74e-01 98.4% 92.9%