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YP_009817877.1

Arc-Vir

NC_048127__YP_009817877.1__HOU83-gp36__00036

Identity

Accession:
NC_048127 ↗
Protein ID:
YP_009817877.1 ↗
Kingdom:
archaea

Quality

80.8 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Deltalipothrixvirus› Sulfolobales_Beppu_filamentous_virus_3

TaxID: 2493124

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-132
PDB
Domain cluster: rep: ON615601.1__UTS51982.1__X__00034__D5-121
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 27.0 3.10e-01 71.1% 54.9%
4kkpA02 2.60.40.3880 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 38.0 4.04e-01 72.7% 72.6%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.59 29.0 3.04e-01 76.6% 49.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 28.0 2.99e-01 71.9% 49.1%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 39.0 3.97e-01 75.8% 73.0%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.56 23.0 3.31e-01 71.1% 80.3%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 41.0 4.07e-01 75.0% 73.3%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 25.0 2.80e-01 72.7% 49.5%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.55 37.0 3.80e-01 100.0% 71.9%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 36.0 3.89e-01 72.7% 78.9%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 26.0 2.82e-01 100.0% 49.5%
4g2aA01 2.60.40.3680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 48.0 3.87e-01 94.5% 62.4%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 31.0 3.40e-01 76.6% 71.0%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.53 39.0 4.33e-01 97.7% 100.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 26.0 3.36e-01 78.1% 87.5%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 37.0 2.82e-01 75.0% 67.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252235 11.1.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.60 42.0 4.29e-01 75.0% 72.8%
4944124 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 35.0 4.05e-01 71.1% 79.8%
3254117 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.59 41.0 4.24e-01 74.2% 75.0%
135591 265.1.1.4 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › PhiCb5_coat 0.59 29.0 3.04e-01 76.6% 49.2%
5048975 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 40.0 4.49e-01 76.6% 92.0%
3483566 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 31.0 3.41e-01 71.9% 63.8%
3481000 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 36.0 3.67e-01 74.2% 66.4%
140125 11.1.1.93 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1425 0.54 36.0 3.89e-01 72.7% 78.9%
5043858 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.21e-01 83.6% 93.6%
4880974 1.1.7.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Astro_capsid_p 0.53 40.0 3.32e-01 78.9% 58.4%
3615658 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.58e-01 83.6% 82.0%
4964628 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.52 38.0 3.65e-01 76.6% 66.7%
5054968 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.79e-01 84.4% 92.9%
3848944 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.01e-01 93.8% 70.3%
3940546 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.50 31.0 3.29e-01 72.7% 68.7%
D2 medium residues 139-154_195-275
PDB
Domain cluster: rep: KX467643__AOS58402.1__X__00047__D151-226
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 37.0 2.89e-01 79.4% 27.2%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.63 47.0 4.25e-01 79.4% 96.2%
4ojdH03 2.60.40.3980 Mainly Beta › Sandwich › Immunoglobulin-like › Cell-cell fusogen EFF/AFF, domain 3 0.62 42.0 4.13e-01 70.1% 65.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 4.26e-01 87.6% 87.7%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 33.0 4.05e-01 80.4% 85.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.25e-01 87.6% 87.0%
5z1aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.70e-01 71.1% 68.6%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.80e-01 70.1% 71.2%
2kzbA00 2.60.40.2830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.83e-01 76.3% 64.9%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 46.0 3.15e-01 96.9% 83.3%
2cwrA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 3.81e-01 71.1% 81.4%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.54 44.0 4.37e-01 88.7% 83.3%
3zkbI02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 41.0 3.50e-01 81.4% 64.4%
6a6yA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.54 39.0 3.36e-01 76.3% 67.8%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.53 43.0 4.00e-01 87.6% 83.6%
1rocA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.53 39.0 3.33e-01 76.3% 69.7%
3cwvA02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 40.0 3.49e-01 81.4% 69.5%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 39.0 3.64e-01 79.4% 73.8%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 2.78e-01 78.4% 82.9%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 32.0 3.88e-01 76.3% 100.0%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.51 39.0 3.59e-01 81.4% 90.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030840 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 44.0 4.07e-01 73.2% 64.0%
5052821 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 42.0 4.13e-01 70.1% 65.7%
3211239 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.61 42.0 4.12e-01 70.1% 67.6%
3896411 11.1.1.414 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.61 42.0 3.79e-01 71.1% 61.5%
3573614 310.3.1.18 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PAP_PilO 0.61 44.0 4.72e-01 82.5% 87.1%
5029585 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 41.0 4.26e-01 72.2% 74.4%
5047424 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 35.0 3.25e-01 80.4% 45.0%
3274850 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.23e-01 71.1% 72.6%
4992847 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 36.0 4.06e-01 79.4% 80.0%
5054836 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.89e-01 72.2% 73.9%
4942730 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 38.0 3.87e-01 72.2% 68.4%
5030318 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.83e-01 71.1% 64.4%
3251289 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 4.02e-01 90.7% 71.0%
4991720 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.57 37.0 3.38e-01 96.9% 50.4%
5033328 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 40.0 3.75e-01 74.2% 95.0%
4943501 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.80e-01 73.2% 90.5%
4928963 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.75e-01 71.1% 72.0%
3248103 11.1.1.1040 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28849 0.54 41.0 3.84e-01 95.9% 65.8%
3692120 2007.12.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Beta-D-glucan exohydrolase, C-terminal domain › Beta-D-glucan exohydrolase, C-terminal domain 0.54 46.0 2.94e-01 95.9% 53.3%
3224516 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.53 36.0 3.84e-01 70.1% 81.2%
5039915 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.98e-01 90.7% 82.1%
341211 212.1.1.2 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_gyraseB 0.52 40.0 3.45e-01 81.4% 67.5%
4975052 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 32.0 2.96e-01 97.9% 46.2%
4944124 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.79e-01 75.3% 80.9%
4997108 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.15e-01 72.2% 51.7%
5056054 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.51 33.0 3.41e-01 71.1% 67.4%
3413702 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 39.0 3.09e-01 80.4% 74.2%
4162152 109.4.1.1907 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xin 0.50 38.0 2.30e-01 79.4% 18.0%
5083880 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.50 42.0 3.72e-01 92.8% 93.1%