←Back to structures
YP_009817929.1
Arc-VirNC_048128__YP_009817929.1__HOU84-gp34__00034
Identity
- Accession:
- NC_048128 ↗
- Protein ID:
- YP_009817929.1 ↗
- Kingdom:
- archaea
Quality
69.6
mean pLDDT
Taxonomy
Zilligvirae›
Taleaviricota›
Tokiviricetes›
Ligamenvirales›
Lipothrixviridae›
Alphalipothrixvirus›
Sulfolobales_Beppu_filamentous_virus_2
TaxID: 2493123
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-91
D2
medium
residues 92-166
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25648.2 best | SFV1_VP5 | 116.2 | 2.70e-33 | 100.0% | 37.7% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aqoA01 | 3.30.70.3400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 48.0 | 4.70e-01 | 85.3% | 67.5% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 42.0 | 4.00e-01 | 85.3% | 51.1% |
| 3ewgA00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.67 | 43.0 | 4.23e-01 | 84.0% | 61.3% |
| 4v1al00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.65 | 46.0 | 3.84e-01 | 96.0% | 42.1% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.65 | 49.0 | 4.66e-01 | 81.3% | 90.9% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 42.0 | 4.33e-01 | 85.3% | 72.5% |
| 5tfmA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.61 | 43.0 | 4.04e-01 | 100.0% | 58.2% |
| 1wj5A01 | 1.10.10.980 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain | 0.61 | 44.0 | 4.07e-01 | 77.3% | 100.0% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.87e-01 | 100.0% | 59.8% |
| 7bkea01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 3.64e-01 | 81.3% | 59.5% |
| 2lycA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.59 | 41.0 | 3.47e-01 | 72.0% | 80.0% |
| 4zxwB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.59 | 40.0 | 3.11e-01 | 85.3% | 30.8% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.59 | 46.0 | 4.24e-01 | 86.7% | 97.1% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 42.0 | 3.96e-01 | 89.3% | 61.7% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 40.0 | 3.45e-01 | 92.0% | 44.1% |
| 2j0wA04 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 40.0 | 4.06e-01 | 84.0% | 76.0% |
| 6n8eA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 39.0 | 3.02e-01 | 85.3% | 31.4% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 45.0 | 4.58e-01 | 97.3% | 90.7% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.96e-01 | 78.7% | 70.9% |
| 1oaoC03 | 3.30.1650.10 | Alpha Beta › 2-Layer Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 | 0.56 | 42.0 | 3.33e-01 | 98.7% | 36.4% |
| 3fveA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.55 | 40.0 | 3.31e-01 | 93.3% | 39.0% |
| 3h5xA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 39.0 | 3.40e-01 | 74.7% | 63.8% |
| 2phcB01 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 40.0 | 3.90e-01 | 96.0% | 69.9% |
| 6n59A02 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.63e-01 | 97.3% | 64.3% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 48.0 | 3.53e-01 | 100.0% | 91.8% |
| 1i7qA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.54 | 44.0 | 2.74e-01 | 96.0% | 85.3% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.79e-01 | 100.0% | 81.2% |
| 7x0fA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 42.0 | 3.52e-01 | 94.7% | 87.8% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 41.0 | 4.16e-01 | 100.0% | 89.3% |
| 6l2cB00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 45.0 | 2.85e-01 | 98.7% | 84.2% |
| 1fi4A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.52 | 39.0 | 3.00e-01 | 85.3% | 65.2% |
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 4.06e-01 | 100.0% | 86.7% |
| 3dxqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.74e-01 | 97.3% | 72.3% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 42.0 | 3.25e-01 | 89.3% | 60.5% |
| 2zueA01 | 3.30.1360.70 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain | 0.52 | 45.0 | 3.97e-01 | 100.0% | 75.7% |
| 1vkwA02 | 3.40.109.30 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 | 0.51 | 43.0 | 4.02e-01 | 97.3% | 81.2% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.64e-01 | 73.3% | 100.0% |
| 4i98C01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.73e-01 | 78.7% | 81.3% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 44.0 | 3.52e-01 | 97.3% | 84.8% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.50 | 39.0 | 2.96e-01 | 88.0% | 38.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946195 | 304.120.1.19 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › THUMP | 0.70 | 43.0 | 4.61e-01 | 85.3% | 72.3% |
| 4137842 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 45.0 | 4.17e-01 | 89.3% | 51.0% |
| 1125246 | 306.3.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 | 0.68 | 48.0 | 4.79e-01 | 96.0% | 72.4% |
| 3519165 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 50.0 | 4.86e-01 | 100.0% | 72.9% |
| 3940062 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 50.0 | 3.31e-01 | 86.7% | 64.1% |
| 4978338 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.63 | 54.0 | 4.31e-01 | 100.0% | 78.7% |
| 4994727 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.62 | 39.0 | 3.99e-01 | 80.0% | 67.1% |
| 3489258 | 306.8.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like | 0.62 | 44.0 | 3.98e-01 | 96.0% | 54.3% |
| 4979350 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.44e-01 | 100.0% | 58.3% |
| 3344177 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.60 | 37.0 | 4.33e-01 | 82.7% | 100.0% |
| 5027879 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.60 | 44.0 | 4.46e-01 | 80.0% | 81.3% |
| 3255461 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 41.0 | 4.02e-01 | 81.3% | 64.7% |
| 3826191 | 387.1.5.36 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF30860 | 0.59 | 35.0 | 4.16e-01 | 70.7% | 100.0% |
| 4992387 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.58 | 51.0 | 4.28e-01 | 100.0% | 66.2% |
| 4980414 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.57 | 44.0 | 4.40e-01 | 86.7% | 100.0% |
| 4264297 | 101.1.2.760 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30824 | 0.57 | 45.0 | 3.74e-01 | 86.7% | 74.1% |
| 5261 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.57 | 42.0 | 3.94e-01 | 88.0% | 64.8% |
| 5053069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 4.28e-01 | 100.0% | 90.0% |
| 4559263 | 310.1.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N | 0.56 | 47.0 | 4.30e-01 | 94.7% | 86.0% |
| 4519566 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.56 | 42.0 | 4.15e-01 | 97.3% | 77.5% |
| 3727831 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.55 | 43.0 | 4.16e-01 | 86.7% | 95.3% |
| 3364966 | 304.20.1.3 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 | 0.55 | 43.0 | 3.53e-01 | 86.7% | 50.3% |
| 3984011 | 206.1.1.33 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › OspG_kinase | 0.55 | 45.0 | 3.48e-01 | 97.3% | 39.4% |
| 5488 | 205.1.1.23 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nqo3_Fer4 | 0.55 | 37.0 | 3.63e-01 | 96.0% | 62.4% |
| 3208574 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 41.0 | 2.53e-01 | 81.3% | 97.4% |
| 4290626 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.54 | 38.0 | 2.83e-01 | 74.7% | 38.0% |
| 4633201 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 36.0 | 2.80e-01 | 85.3% | 28.6% |
| 3590255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.90e-01 | 81.3% | 75.3% |
| 5015480 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.53 | 44.0 | 3.61e-01 | 90.7% | 77.0% |
| 4948522 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.53 | 46.0 | 4.37e-01 | 97.3% | 93.2% |
| 2506903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.29e-01 | 72.0% | 69.7% |
| 3678569 | 109.4.1.2687 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 | 0.53 | 39.0 | 2.67e-01 | 78.7% | 50.9% |
| 2429491 | 205.1.1.23 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nqo3_Fer4 | 0.53 | 35.0 | 3.48e-01 | 84.0% | 62.7% |
| 4971096 | 310.1.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain | 0.53 | 46.0 | 4.41e-01 | 100.0% | 95.6% |
| 5012106 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.53 | 36.0 | 3.10e-01 | 100.0% | 40.7% |
| 3600265 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.52 | 46.0 | 4.05e-01 | 100.0% | 69.6% |
| 4954889 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.52 | 36.0 | 3.77e-01 | 100.0% | 84.6% |
| 4506543 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 4.15e-01 | 100.0% | 83.5% |
| 3782093 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.51 | 44.0 | 4.28e-01 | 98.7% | 89.4% |
| 4994982 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.51 | 37.0 | 3.78e-01 | 78.7% | 82.7% |
| 3931130 | 4300.1.1.0 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like | 0.51 | 37.0 | 2.97e-01 | 77.3% | 48.7% |
| 4963142 | 101.1.2.908 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF5787 | 0.51 | 35.0 | 3.58e-01 | 100.0% | 72.0% |
| 5003985 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.51 | 35.0 | 3.01e-01 | 100.0% | 41.5% |
| 4969689 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 37.0 | 3.95e-01 | 100.0% | 90.8% |
| 3941213 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.51 | 40.0 | 3.71e-01 | 100.0% | 67.0% |
| 4995927 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.51 | 44.0 | 4.19e-01 | 98.7% | 91.1% |
| 3799929 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 39.0 | 3.08e-01 | 88.0% | 92.0% |