←Back to structures
NC_048134.1__YP_009818174.1__HOU90_gp027__00027
Bact-VirNC_048134.1__YP_009818174.1__HOU90_gp027__00027
Identity
- Accession:
- NC_048134 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Harbinvirus›
Lactobacillus_phage_Lpa804
TaxID: 2059850
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-115
Domain cluster:
rep: NC_047948.1__YP_009799981.1__HOT02_gp141__00140__D1-84
D2
high
residues 118-183_246-252
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 60.0 | 6.27e-01 | 84.9% | 77.9% |
| 1e0gA00 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.60 | 32.0 | 3.72e-01 | 76.7% | 75.0% |
| 1ptmA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.56 | 46.0 | 3.11e-01 | 97.3% | 42.1% |
| 3kk7A03 | 3.30.160.840 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 38.0 | 4.07e-01 | 100.0% | 87.1% |
| 7k5cB01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 39.0 | 3.02e-01 | 75.3% | 42.1% |
| 3l9aX01 | 3.30.720.180 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 39.0 | 3.96e-01 | 100.0% | 76.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.54 | 34.0 | 4.13e-01 | 71.2% | 100.0% |
| 4r30A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 43.0 | 3.41e-01 | 94.5% | 81.0% |
| 1mjgM05 | 3.40.1470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 › Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 | 0.54 | 46.0 | 3.86e-01 | 98.6% | 55.4% |
| 5ce8A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 39.0 | 3.35e-01 | 79.5% | 95.1% |
| 3kdrA03 | 3.30.1120.70 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 34.0 | 3.85e-01 | 84.9% | 94.0% |
| 6j7cA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 39.0 | 3.12e-01 | 84.9% | 86.1% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 40.0 | 3.40e-01 | 86.3% | 57.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.86 | 60.0 | 6.23e-01 | 84.9% | 76.8% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.76 | 50.0 | 5.82e-01 | 80.8% | 98.0% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.75 | 54.0 | 5.57e-01 | 86.3% | 79.7% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.74 | 54.0 | 5.15e-01 | 83.6% | 65.9% |
| 4992153 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.59 | 45.0 | 4.63e-01 | 98.6% | 84.3% |
| 3925474 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 35.0 | 4.18e-01 | 79.5% | 88.0% |
| 3973974 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 41.0 | 3.67e-01 | 79.5% | 92.7% |
| 3190345 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.55 | 35.0 | 4.06e-01 | 79.5% | 87.3% |
| 3937049 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.55 | 48.0 | 3.29e-01 | 100.0% | 31.5% |
| 3923380 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.55 | 48.0 | 3.31e-01 | 100.0% | 33.2% |
| 4436337 | 7510.1.1.5 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › PdxA | 0.54 | 44.0 | 3.66e-01 | 93.2% | 97.1% |
| 3213898 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.54 | 48.0 | 3.39e-01 | 100.0% | 36.1% |
| 3244111 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.54 | 48.0 | 3.30e-01 | 100.0% | 31.5% |
| 5031012 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 3.88e-01 | 87.7% | 88.6% |
| 3937859 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.54 | 48.0 | 3.20e-01 | 100.0% | 31.4% |
| 3937684 | 2004.1.1.104 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 | 0.53 | 47.0 | 3.21e-01 | 100.0% | 32.3% |
| 5019121 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.53 | 39.0 | 3.42e-01 | 80.8% | 87.8% |
| 3185599 | 12.3.1.36 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF5127 | 0.52 | 43.0 | 2.73e-01 | 90.4% | 58.7% |
| 4946147 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 4.27e-01 | 86.3% | 91.4% |
| 3210904 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.52 | 47.0 | 3.82e-01 | 100.0% | 97.0% |
| None | — | 0.51 | 42.0 | 2.71e-01 | 90.4% | 57.2% | |
| 3931960 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 38.0 | 2.78e-01 | 100.0% | 27.1% |
| 3716044 | 212.1.1.17 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV | 0.50 | 38.0 | 3.05e-01 | 87.7% | 93.1% |
D3
high
residues 186-241
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d4rE01 | 2.40.128.400 | Mainly Beta › Beta Barrel › Lipocalin › | 0.69 | 39.0 | 3.41e-01 | 100.0% | 35.7% |
| 2v5yA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 45.0 | 3.80e-01 | 100.0% | 42.1% |
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 46.0 | 3.97e-01 | 100.0% | 49.4% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.64 | 55.0 | 5.50e-01 | 98.2% | 100.0% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.58 | 47.0 | 3.39e-01 | 91.1% | 74.4% |
| 2o62A02 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 49.0 | 3.72e-01 | 100.0% | 86.9% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.45e-01 | 94.6% | 49.4% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 41.0 | 3.51e-01 | 91.1% | 61.7% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.53 | 46.0 | 3.86e-01 | 100.0% | 76.0% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.31e-01 | 92.9% | 47.9% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.13e-01 | 92.9% | 45.2% |
| 1b9mB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 33.0 | 3.09e-01 | 85.7% | 51.4% |
| 2v9vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.66e-01 | 92.9% | 75.0% |
| 6iouA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 46.0 | 3.64e-01 | 100.0% | 71.4% |
| 3c8cB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 46.0 | 3.61e-01 | 100.0% | 72.6% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.11e-01 | 80.4% | 64.4% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.50 | 43.0 | 3.91e-01 | 100.0% | 73.4% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.50 | 33.0 | 3.11e-01 | 100.0% | 51.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944138 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.69 | 53.0 | 4.33e-01 | 83.9% | 56.2% |
| 4930766 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.64 | 50.0 | 3.76e-01 | 100.0% | 35.6% |
| 3512773 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.64 | 55.0 | 4.42e-01 | 100.0% | 79.1% |
| 4566976 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.61 | 39.0 | 4.38e-01 | 100.0% | 92.5% |
| 3798117 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 51.0 | 4.26e-01 | 100.0% | 89.0% |
| 3628286 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.58 | 43.0 | 3.40e-01 | 83.9% | 53.1% |
| 3525970 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.56 | 41.0 | 3.28e-01 | 100.0% | 38.3% |
| 4353397 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.56 | 45.0 | 3.04e-01 | 100.0% | 27.8% |
| 4029539 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 47.0 | 3.75e-01 | 100.0% | 61.7% |
| 3211117 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.55 | 46.0 | 3.76e-01 | 100.0% | 90.4% |
| 3461177 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.53 | 41.0 | 3.44e-01 | 94.6% | 49.0% |
| 3227646 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.50 | 40.0 | 3.75e-01 | 100.0% | 90.0% |
| 3315278 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.50 | 38.0 | 3.02e-01 | 85.7% | 59.2% |
| 4677975 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.50 | 44.0 | 3.50e-01 | 100.0% | 47.5% |
| 4958260 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.50 | 39.0 | 3.42e-01 | 98.2% | 84.8% |