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NC_048134.1__YP_009818182.1__HOU90_gp035__00035
Bact-VirNC_048134.1__YP_009818182.1__HOU90_gp035__00035
Identity
- Accession:
- NC_048134 ↗
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Harbinvirus›
Lactobacillus_phage_Lpa804
TaxID: 2059850
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-126
Domain cluster:
rep: IMGVR_UViG_3300000193_000135-3300000193-SI47jul10_135mDRAFT_10031922__D19-143
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26915.1 best | Phage_P4_cII | 54.9 | 1.40e-14 | 97.5% | 51.5% |
CATH (71)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vldA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.75 | 62.0 | 6.55e-01 | 95.0% | 98.2% |
| 1f3lA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 43.0 | 4.07e-01 | 76.0% | 53.8% |
| 4qysA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 39.0 | 4.20e-01 | 73.6% | 71.2% |
| 5ilgB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 57.0 | 4.42e-01 | 100.0% | 91.5% |
| 4lwoE01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 43.0 | 3.90e-01 | 76.9% | 53.1% |
| 4dg8A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.62 | 53.0 | 3.71e-01 | 100.0% | 28.0% |
| 3a04A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 45.0 | 3.58e-01 | 76.0% | 68.9% |
| 1n5dA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 55.0 | 4.20e-01 | 100.0% | 90.6% |
| 5bjuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 55.0 | 4.12e-01 | 100.0% | 79.7% |
| 5tqjA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 49.0 | 4.91e-01 | 100.0% | 83.9% |
| 3dxiA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 52.0 | 3.95e-01 | 94.2% | 75.9% |
| 4urjD00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.61 | 47.0 | 4.10e-01 | 80.2% | 97.1% |
| 3tbfA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.61 | 50.0 | 4.71e-01 | 89.3% | 87.9% |
| 3jteA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 49.0 | 4.84e-01 | 100.0% | 83.3% |
| 3ldhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 50.0 | 4.51e-01 | 88.4% | 83.3% |
| 3vvbA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 53.0 | 4.16e-01 | 99.2% | 69.6% |
| 3hdoA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.60 | 52.0 | 4.29e-01 | 95.0% | 62.7% |
| 3vnrA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.60 | 53.0 | 3.73e-01 | 100.0% | 30.3% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 40.0 | 4.21e-01 | 72.7% | 74.8% |
| 2o7sA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 50.0 | 4.07e-01 | 91.7% | 94.0% |
| 3eucA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 51.0 | 4.33e-01 | 95.0% | 71.0% |
| 2l5oA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 45.0 | 4.20e-01 | 94.2% | 64.0% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.59 | 53.0 | 4.99e-01 | 98.3% | 82.9% |
| 2ziuB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 52.0 | 4.85e-01 | 98.3% | 78.5% |
| 2g5cA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 53.0 | 4.79e-01 | 100.0% | 85.8% |
| 1ep3B02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.59 | 40.0 | 4.14e-01 | 72.7% | 71.8% |
| 7cpxA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 53.0 | 3.89e-01 | 100.0% | 62.6% |
| 4kruA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 49.0 | 4.06e-01 | 90.1% | 71.5% |
| 7lldA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 51.0 | 4.08e-01 | 95.0% | 59.7% |
| 4jz5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 50.0 | 4.23e-01 | 95.0% | 92.7% |
| 3gu3A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 4.64e-01 | 98.3% | 97.6% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 4.30e-01 | 100.0% | 68.1% |
| 3pffA05 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.57 | 51.0 | 4.54e-01 | 100.0% | 68.0% |
| 1jfxA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 50.0 | 4.17e-01 | 96.7% | 90.3% |
| 4zpjA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 49.0 | 4.43e-01 | 100.0% | 68.4% |
| 1x7dA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 46.0 | 4.17e-01 | 89.3% | 93.5% |
| 3ntvA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 51.0 | 4.25e-01 | 100.0% | 84.3% |
| 1o54A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 50.0 | 4.33e-01 | 99.2% | 90.2% |
| 3grzB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 50.0 | 4.32e-01 | 100.0% | 79.3% |
| 3fbtA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 44.0 | 4.29e-01 | 83.5% | 100.0% |
| 4r0mB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 50.0 | 3.45e-01 | 100.0% | 29.5% |
| 2f9sB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 42.0 | 4.06e-01 | 92.6% | 70.6% |
| 3lrtA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 49.0 | 4.77e-01 | 96.7% | 99.2% |
| 1jqlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 4.23e-01 | 87.6% | 80.7% |
| 3w0lB03 | 3.40.50.12620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 47.0 | 4.56e-01 | 91.7% | 93.3% |
| 7ec2A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 47.0 | 4.44e-01 | 100.0% | 76.2% |
| 3n8hA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 47.0 | 4.17e-01 | 94.2% | 85.2% |
| 4ymhD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 49.0 | 3.96e-01 | 100.0% | 80.3% |
| 2r3bA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 48.0 | 3.77e-01 | 100.0% | 74.2% |
| 4gelB00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.54 | 40.0 | 3.41e-01 | 76.9% | 94.9% |
| 1hyhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 48.0 | 4.58e-01 | 97.5% | 93.6% |
| 6rqaA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 4.23e-01 | 97.5% | 93.5% |
| 4mp8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 44.0 | 3.95e-01 | 90.1% | 94.2% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.51e-01 | 100.0% | 90.3% |
| 4ydsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.72e-01 | 95.0% | 73.5% |
| 3tixB02 | 3.40.1010.30 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › | 0.53 | 45.0 | 4.50e-01 | 95.9% | 89.5% |
| 4m1bA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.52 | 44.0 | 3.82e-01 | 94.2% | 63.5% |
| 1hgxA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 45.0 | 4.11e-01 | 95.0% | 72.0% |
| 4hlnA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 43.0 | 3.63e-01 | 95.9% | 51.7% |
| 2y0eB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 46.0 | 3.86e-01 | 100.0% | 89.0% |
| 4bguA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 46.0 | 4.40e-01 | 99.2% | 94.4% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 36.0 | 3.40e-01 | 85.1% | 57.9% |
| 1gu7A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 44.0 | 3.92e-01 | 95.9% | 87.8% |
| 2vn8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.90e-01 | 95.0% | 91.8% |
| 1yb2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 45.0 | 3.72e-01 | 100.0% | 63.5% |
| 4akgA15 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 40.0 | 3.99e-01 | 95.9% | 82.0% |
| 6i3mE02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.50 | 45.0 | 3.80e-01 | 98.3% | 94.5% |
| 7k3zG01 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.50 | 41.0 | 3.40e-01 | 87.6% | 59.2% |
| 3qp9D00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 3.05e-01 | 99.2% | 45.1% |
| 3h8vB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 3.70e-01 | 100.0% | 54.5% |
| 1tt5C01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 43.0 | 3.26e-01 | 97.5% | 86.5% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030998 | 2008.1.1.205 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915 | 0.88 | 76.0 | 6.05e-01 | 100.0% | 49.5% |
| 4958464 | 2008.1.1.205 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915 | 0.86 | 70.0 | 7.06e-01 | 100.0% | 85.0% |
| 5076660 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.83 | 71.0 | 7.33e-01 | 100.0% | 96.5% |
| 5040208 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.82 | 70.0 | 6.79e-01 | 100.0% | 81.5% |
| 4983181 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.81 | 66.0 | 6.65e-01 | 100.0% | 85.8% |
| 4990485 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.78 | 72.0 | 6.31e-01 | 100.0% | 72.6% |
| 4090404 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.78 | 65.0 | 6.81e-01 | 100.0% | 97.3% |
| 4934246 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 67.0 | 6.55e-01 | 97.5% | 84.6% |
| 4967863 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 71.0 | 7.07e-01 | 100.0% | 96.0% |
| 3589020 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 68.0 | 6.26e-01 | 100.0% | 77.3% |
| 4152845 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.74 | 68.0 | 6.22e-01 | 100.0% | 97.5% |
| 4954702 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.74 | 54.0 | 5.50e-01 | 97.5% | 75.8% |
| 4991881 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 62.0 | 6.47e-01 | 95.0% | 98.2% |
| 4933651 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.74 | 68.0 | 6.23e-01 | 100.0% | 97.4% |
| 5048986 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.73 | 68.0 | 5.77e-01 | 100.0% | 95.3% |
| 5025921 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 61.0 | 6.37e-01 | 90.1% | 97.3% |
| 5040990 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 63.0 | 6.51e-01 | 100.0% | 98.3% |
| 5053767 | 2008.1.1.155 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc | 0.72 | 67.0 | 5.75e-01 | 100.0% | 96.8% |
| 4998521 | 2008.1.1.5 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C | 0.72 | 53.0 | 5.54e-01 | 76.0% | 94.5% |
| 3976034 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 56.0 | 5.72e-01 | 95.9% | 85.2% |
| 4053762 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 56.0 | 5.66e-01 | 99.2% | 83.3% |
| 3952449 | 2008.1.1.114 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 | 0.71 | 57.0 | 5.92e-01 | 98.3% | 93.6% |
| 3285731 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 65.0 | 6.13e-01 | 100.0% | 94.5% |
| 4950297 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 65.0 | 6.04e-01 | 100.0% | 80.0% |
| 3944117 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 65.0 | 5.91e-01 | 100.0% | 84.8% |
| 4972570 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.70 | 58.0 | 5.98e-01 | 97.5% | 93.0% |
| 5010842 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 64.0 | 5.88e-01 | 100.0% | 80.6% |
| 4976802 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 59.0 | 5.70e-01 | 94.2% | 83.7% |
| 4978659 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 60.0 | 5.84e-01 | 100.0% | 90.0% |
| 2715553 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.66 | 59.0 | 6.01e-01 | 98.3% | 99.2% |
| 4928402 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 56.0 | 5.75e-01 | 98.3% | 95.7% |
| 4962258 | 2008.1.1.219 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 | 0.65 | 55.0 | 5.68e-01 | 98.3% | 97.4% |
| 4640322 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 53.0 | 5.65e-01 | 98.3% | 100.0% |
| 4085949 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.63 | 57.0 | 4.53e-01 | 100.0% | 79.6% |
| 3815492 | 2003.1.5.121 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 | 0.63 | 43.0 | 3.57e-01 | 73.6% | 40.4% |
| 4947688 | 7584.1.1.10 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › GH3_M | 0.61 | 55.0 | 4.18e-01 | 99.2% | 63.4% |
| 5079670 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.61 | 51.0 | 4.44e-01 | 90.1% | 70.8% |
| 5011959 | 2002.1.1.66 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I | 0.61 | 52.0 | 4.23e-01 | 90.1% | 87.9% |
| 3593873 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.61 | 52.0 | 4.63e-01 | 91.7% | 90.6% |
| 3744609 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.61 | 51.0 | 4.32e-01 | 90.1% | 68.3% |
| None | — | 0.61 | 54.0 | 3.98e-01 | 100.0% | 79.4% | |
| 4870619 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.61 | 40.0 | 3.84e-01 | 71.9% | 57.1% |
| 3627662 | 2007.15.1.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd, DRHyd-ASK | 0.61 | 55.0 | 4.82e-01 | 100.0% | 67.8% |
| 3618420 | 7512.1.1.54 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 | 0.60 | 44.0 | 3.62e-01 | 76.9% | 51.2% |
| 3785842 | 2003.1.5.146 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GuanidinoAc_N-MeTrfase | 0.59 | 53.0 | 4.19e-01 | 100.0% | 83.5% |
| 5075820 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.59 | 43.0 | 3.84e-01 | 75.2% | 83.5% |
| 3943011 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.59 | 47.0 | 4.21e-01 | 85.1% | 77.1% |
| None | — | 0.58 | 50.0 | 4.05e-01 | 98.3% | 88.8% | |
| 3519195 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.58 | 43.0 | 4.33e-01 | 77.7% | 97.5% |
| 3957899 | 2005.1.1.72 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30635 | 0.57 | 41.0 | 3.89e-01 | 73.6% | 86.9% |
| 4015230 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.57 | 51.0 | 3.66e-01 | 100.0% | 56.2% |
| 4484342 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.56 | 48.0 | 4.44e-01 | 94.2% | 94.8% |
| 4423027 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.56 | 48.0 | 4.17e-01 | 93.4% | 68.6% |
| 5049456 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.55 | 41.0 | 3.92e-01 | 76.9% | 91.4% |
| 5000176 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 48.0 | 3.58e-01 | 100.0% | 82.6% |
| 3735156 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 50.0 | 4.37e-01 | 99.2% | 72.6% |
| 4890580 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.53 | 46.0 | 4.08e-01 | 100.0% | 64.6% |
| 4468396 | 7512.1.1.9 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB | 0.53 | 48.0 | 4.04e-01 | 100.0% | 72.0% |
| 4941782 | 2002.1.1.77 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 | 0.53 | 46.0 | 3.78e-01 | 95.0% | 69.5% |
| 5047918 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.52 | 46.0 | 4.55e-01 | 100.0% | 90.0% |
| 4968419 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.52 | 45.0 | 4.10e-01 | 95.0% | 93.1% |
| 5058388 | 2007.15.1.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7768 | 0.52 | 38.0 | 4.02e-01 | 100.0% | 87.3% |
| 4143377 | 7512.1.1.16 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth | 0.52 | 42.0 | 4.12e-01 | 100.0% | 80.0% |
| 3587108 | 2005.1.1.72 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30635 | 0.50 | 43.0 | 4.12e-01 | 92.6% | 90.0% |
| 3518577 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.50 | 43.0 | 3.29e-01 | 95.0% | 86.1% |
| 5078411 | 7592.1.1.6 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N | 0.50 | 45.0 | 4.34e-01 | 100.0% | 90.0% |
| 5077342 | 7592.1.1.6 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N | 0.50 | 45.0 | 4.33e-01 | 100.0% | 92.9% |
| 5057690 | 7592.1.1.3 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N | 0.50 | 43.0 | 4.19e-01 | 100.0% | 85.4% |
D2
high
residues 137-220
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2abkA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.63 | 38.0 | 3.63e-01 | 98.8% | 50.5% |
| 4nphA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 42.0 | 4.52e-01 | 77.4% | 100.0% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 43.0 | 4.38e-01 | 79.8% | 83.7% |
| 7jveC01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 43.0 | 3.15e-01 | 90.5% | 28.6% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 38.0 | 3.24e-01 | 72.6% | 75.2% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.55 | 44.0 | 3.79e-01 | 90.5% | 65.2% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 29.0 | 3.39e-01 | 94.0% | 76.4% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 37.0 | 3.69e-01 | 70.2% | 68.2% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.54 | 39.0 | 3.89e-01 | 77.4% | 81.4% |
| 1ezfC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 40.0 | 2.77e-01 | 81.0% | 30.0% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 40.0 | 3.87e-01 | 79.8% | 77.9% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 32.0 | 3.34e-01 | 81.0% | 64.1% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.53 | 36.0 | 3.70e-01 | 70.2% | 74.7% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.53 | 45.0 | 4.04e-01 | 100.0% | 85.0% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.53 | 39.0 | 3.70e-01 | 81.0% | 83.7% |
| 4hfkB00 | 1.20.120.1620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 35.0 | 3.41e-01 | 70.2% | 81.6% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.52 | 33.0 | 3.71e-01 | 91.7% | 96.4% |
| 2nyvA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 35.0 | 3.79e-01 | 90.5% | 92.2% |
| 4ax2A01 | 1.20.120.1620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 40.0 | 3.72e-01 | 88.1% | 93.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2724036 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.59 | 42.0 | 4.63e-01 | 86.9% | 100.0% |
| 4003083 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.59 | 45.0 | 3.91e-01 | 90.5% | 51.9% |
| 4030152 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.57 | 49.0 | 4.53e-01 | 100.0% | 74.8% |
| 4179991 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.57 | 42.0 | 4.19e-01 | 79.8% | 74.4% |
| 5049134 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.56 | 42.0 | 4.07e-01 | 79.8% | 70.5% |
| 3226726 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.56 | 44.0 | 4.03e-01 | 85.7% | 66.1% |
| 3455330 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.56 | 41.0 | 4.35e-01 | 78.6% | 88.0% |
| 3217340 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.55 | 33.0 | 3.61e-01 | 92.9% | 71.4% |
| 3832356 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.54 | 41.0 | 4.37e-01 | 90.5% | 100.0% |
| 1180306 | 632.20.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › TsiV3 protein › TsiV3 protein › TsiV3 | 0.53 | 40.0 | 3.87e-01 | 79.8% | 77.9% |
| 3459019 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.52 | 30.0 | 2.78e-01 | 73.8% | 39.1% |
| 4975876 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.52 | 44.0 | 2.95e-01 | 97.6% | 24.9% |
| 1032491 | 101.1.4.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT | 0.52 | 39.0 | 3.71e-01 | 90.5% | 69.3% |
| 4426361 | 110.1.1.16 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C | 0.51 | 44.0 | 3.92e-01 | 100.0% | 73.1% |
| 3867508 | 110.1.1.22 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C, DEATH_SH3BP4 | 0.51 | 44.0 | 3.38e-01 | 100.0% | 75.8% |
| 5025235 | 2002.1.1.105 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C | 0.51 | 42.0 | 2.54e-01 | 97.6% | 12.1% |
| 1007266 | 3368.1.1.1 ↗ | alpha bundles › Rap2b (SMA2266) › Rap2b (SMA2266) › Rap2b (SMA2266) › Tai4 | 0.50 | 34.0 | 3.29e-01 | 70.2% | 77.2% |