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NC_048134.1__YP_009818233.1__HOU90_gp086__00086

Bact-Vir

NC_048134.1__YP_009818233.1__HOU90_gp086__00086

Identity

Accession:
NC_048134 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-174
PDB
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 39.0 5.40e-01 77.8% 100.0%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 36.0 4.49e-01 71.9% 73.4%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 35.0 3.88e-01 74.9% 55.5%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 35.0 4.52e-01 71.3% 79.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 36.0 3.96e-01 74.9% 57.7%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 34.0 3.73e-01 73.7% 56.3%
2pbiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 37.0 4.66e-01 71.9% 93.3%
6n9gA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 37.0 4.66e-01 72.5% 98.0%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 36.0 4.10e-01 74.3% 80.6%
2hl7A00 1.10.8.640 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Cytochrome C biogenesis protein 0.52 27.0 3.59e-01 98.2% 98.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979317 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.80 37.0 5.22e-01 70.8% 89.4%
3587271 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 6.21e-01 86.0% 96.8%
5022936 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 39.0 4.77e-01 81.9% 87.3%
3705221 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 35.0 4.67e-01 77.2% 100.0%
3974708 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.81e-01 76.6% 99.2%
5078761 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.59 37.0 4.54e-01 71.3% 94.8%
3323105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 4.33e-01 76.6% 100.0%
3621577 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.53 39.0 4.42e-01 78.4% 100.0%
3582572 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 4.35e-01 75.4% 100.0%
D2 high residues 187-276
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 47.0 5.36e-01 98.9% 93.7%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.27e-01 98.9% 45.1%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 4.13e-01 98.9% 41.8%
5bpdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 4.88e-01 97.8% 78.7%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.63e-01 98.9% 71.3%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 4.63e-01 97.8% 72.1%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 5.26e-01 97.8% 93.1%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 4.59e-01 97.8% 81.2%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.33e-01 96.7% 57.9%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 5.10e-01 96.7% 92.9%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.98e-01 98.9% 86.7%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.65e-01 97.8% 68.0%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.12e-01 100.0% 90.9%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.65 50.0 5.24e-01 97.8% 93.8%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.74e-01 98.9% 82.5%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.51e-01 97.8% 78.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.77e-01 97.8% 85.5%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 42.0 4.15e-01 100.0% 67.0%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 4.86e-01 98.9% 96.1%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.52e-01 98.9% 92.7%
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.56 50.0 3.77e-01 100.0% 69.1%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.56 34.0 3.59e-01 100.0% 66.7%
1tigA00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.55 41.0 4.17e-01 100.0% 80.7%
3u21A00 1.10.10.2430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain 0.54 46.0 4.36e-01 98.9% 78.9%
1g0hA02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.52 37.0 3.44e-01 100.0% 59.1%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.52 44.0 4.37e-01 98.9% 91.8%
1lbvA02 3.40.190.80 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.51 37.0 3.51e-01 100.0% 63.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 47.0 3.46e-01 98.9% 25.3%
5061575 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 5.11e-01 98.9% 71.0%
3317316 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.68 56.0 4.84e-01 98.9% 58.0%
4109840 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 53.0 5.12e-01 97.8% 75.0%
5046208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 47.0 5.06e-01 98.9% 86.7%
3339443 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.67 48.0 4.76e-01 98.9% 70.5%
3905735 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.67 48.0 5.00e-01 98.9% 80.0%
5044475 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 5.21e-01 100.0% 82.2%
3787753 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.67 51.0 4.89e-01 98.9% 70.5%
5046227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.89e-01 97.8% 78.8%
3253867 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.66 54.0 4.70e-01 98.9% 58.5%
5017859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.49e-01 98.9% 91.1%
3612970 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.66 47.0 4.61e-01 98.9% 69.4%
3396990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 5.46e-01 97.8% 98.8%
4955353 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.85e-01 98.9% 69.6%
3597746 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.65 45.0 4.79e-01 97.8% 82.5%
4096444 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.64 48.0 5.09e-01 96.7% 90.0%
4545670 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 49.0 4.78e-01 97.8% 74.7%
3701463 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.64 44.0 4.57e-01 97.8% 76.5%
3598367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 4.56e-01 98.9% 73.1%
3225975 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.18e-01 97.8% 55.2%
4094027 101.1.2.59 alpha arrays › HTH › HTH › winged helix domain › DUF480 0.63 48.0 4.91e-01 96.7% 84.7%
3281749 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.63 50.0 4.64e-01 98.9% 67.0%
3940471 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 5.10e-01 98.9% 90.6%
3576823 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.63 45.0 4.04e-01 98.9% 52.7%
3479827 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.60e-01 98.9% 77.3%
3927474 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.63 45.0 4.54e-01 98.9% 76.4%
3785070 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.63 45.0 4.33e-01 97.8% 65.4%
4426232 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.63 51.0 5.18e-01 98.9% 90.0%
3702650 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.63 45.0 4.47e-01 98.9% 72.3%
3608085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.62 45.0 4.46e-01 98.9% 72.3%
3176995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.62 45.0 4.61e-01 98.9% 81.0%
4025713 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.62 43.0 4.70e-01 98.9% 89.2%
3738639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 5.03e-01 97.8% 88.2%
4938390 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.04e-01 98.9% 53.0%
3236801 101.1.2.555 alpha arrays › HTH › HTH › winged helix domain › PF29388 0.61 47.0 4.88e-01 98.9% 87.1%
4948481 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 48.0 3.45e-01 95.6% 29.1%
3413597 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.61 53.0 3.51e-01 100.0% 24.6%
4963932 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 4.49e-01 98.9% 80.0%
3518638 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.61 46.0 4.53e-01 98.9% 76.8%
4968456 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.78e-01 100.0% 94.7%
3254602 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.60 43.0 4.37e-01 100.0% 76.7%
3191841 101.1.2.533 alpha arrays › HTH › HTH › winged helix domain › WH_CYT4 0.60 41.0 4.19e-01 98.9% 72.2%
3279126 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.60 50.0 4.49e-01 100.0% 66.4%
3877553 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.59 48.0 4.69e-01 98.9% 81.0%
4941201 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 5.06e-01 100.0% 93.3%
4026195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.54e-01 97.8% 90.7%
4971999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.20e-01 97.8% 62.4%
3501318 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.58 50.0 3.36e-01 100.0% 51.0%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 51.0 4.57e-01 97.8% 75.2%
3788727 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.56 51.0 4.38e-01 100.0% 85.0%
4971711 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.44e-01 97.8% 71.2%
3946676 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.64e-01 98.9% 87.3%
4929586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 4.00e-01 86.7% 76.5%
4252455 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.50e-01 100.0% 85.3%
3353067 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.56 44.0 4.56e-01 97.8% 96.2%
4583722 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 50.0 4.70e-01 100.0% 95.5%
3255906 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 37.0 3.17e-01 71.1% 42.0%
3256655 101.1.2.77 alpha arrays › HTH › HTH › winged helix domain › ESCRT-II 0.55 44.0 4.20e-01 96.7% 72.7%
4167106 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.17e-01 98.9% 25.1%
3615162 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 2.96e-01 98.9% 21.1%
3235938 304.131.1.1 a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain › Phosphodiest 0.52 38.0 3.69e-01 98.9% 68.6%