Back to structures

NC_048135.1__YP_009949156.1__HOU91_gp48__00048

Bact-Vir

NC_048135.1__YP_009949156.1__HOU91_gp48__00048

Identity

Accession:
NC_048135 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-141
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12236.15 best Head-tail_con 94.8 5.90e-27 100.0% 26.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.67 31.0 3.34e-01 71.8% 49.6%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.62 38.0 4.17e-01 80.9% 74.3%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.55 38.0 3.40e-01 71.8% 50.0%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.54 32.0 3.78e-01 76.3% 86.2%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 30.0 3.31e-01 77.1% 70.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3076017 4038.1.1.0 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.80 75.0 7.53e-01 98.5% 99.2%
3757568 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.54 32.0 3.52e-01 72.5% 70.5%
3267156 633.24.1.0 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.52 26.0 3.00e-01 82.4% 61.0%
5043597 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.51 36.0 3.16e-01 73.3% 83.0%
3907116 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 33.0 3.21e-01 74.8% 57.3%
4980098 3834.1.1.0 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain 0.51 39.0 3.16e-01 80.9% 90.2%
3469895 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.50 42.0 3.17e-01 89.3% 55.1%
D2 medium residues 142-268
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12236.15 best Head-tail_con 69.6 2.50e-19 100.0% 29.2%