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NC_048139.1__YP_009818447.1__HOU95_gp011__00011

Bact-Vir

NC_048139.1__YP_009818447.1__HOU95_gp011__00011

Identity

Accession:
NC_048139 ↗
Kingdom:
phage

Quality

58.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hiyaavirus› Streptomyces_phage_Hiyaa

TaxID: 2499072

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-60
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.68 48.0 4.72e-01 76.1% 83.7%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.64 44.0 4.78e-01 71.7% 97.3%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.28e-01 78.3% 82.8%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 45.0 3.58e-01 78.3% 60.8%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 51.0 3.28e-01 95.7% 91.8%
1p9bA03 3.90.170.10 Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 0.59 40.0 2.82e-01 71.7% 39.6%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 40.0 3.25e-01 73.9% 42.9%
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 43.0 3.79e-01 100.0% 55.9%
4aybP00 2.20.28.30 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L 0.51 35.0 3.63e-01 73.9% 84.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026823 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 51.0 5.24e-01 71.7% 97.7%
3593793 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.74 48.0 4.73e-01 73.9% 62.0%
3609555 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 58.0 5.75e-01 93.5% 96.0%
3922996 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.71 46.0 3.40e-01 71.7% 24.8%
4666101 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 50.0 5.11e-01 76.1% 86.7%
3415761 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.68 49.0 4.82e-01 78.3% 96.0%
4983060 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 44.0 3.77e-01 71.7% 60.0%
3735759 109.4.1.1856 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD_2nd 0.61 41.0 2.28e-01 91.3% 5.4%
4263366 2004.1.1.219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.60 48.0 3.02e-01 89.1% 46.1%
4437923 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 47.0 2.99e-01 89.1% 44.1%
3838150 375.1.1.59 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rubredoxin_2 0.58 43.0 4.38e-01 80.4% 84.4%
4933180 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.57e-01 71.7% 94.3%
4967717 375.1.1.181 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PALP 0.58 41.0 4.49e-01 73.9% 100.0%
3510104 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.58 42.0 4.12e-01 97.8% 70.9%
3385436 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 46.0 2.93e-01 89.1% 46.7%
4367584 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 46.0 2.75e-01 100.0% 52.5%
5056549 375.1.1.204 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.55 37.0 2.86e-01 71.7% 65.5%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.55 49.0 4.63e-01 100.0% 83.6%
4624392 874.1.1.1 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain › SMC_hinge 0.54 44.0 2.64e-01 91.3% 61.5%
3393166 375.10.1.2 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE 0.53 35.0 3.18e-01 89.1% 47.7%
4988934 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 46.0 2.75e-01 100.0% 61.5%
3301199 4070.1.1.1 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.52 43.0 2.73e-01 93.5% 44.9%
3698054 2.1.1.72 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC 0.51 43.0 3.00e-01 100.0% 80.6%
3210219 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 44.0 3.37e-01 100.0% 94.5%