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NC_048139.1__YP_009818494.1__HOU95_gp109__00058
Bact-VirNC_048139.1__YP_009818494.1__HOU95_gp109__00058
Identity
- Accession:
- NC_048139 ↗
- Kingdom:
- phage
Quality
67.7
mean pLDDT
Taxonomy
TaxID: 2499072
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.74 | 58.0 | 4.19e-01 | 87.3% | 78.5% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.67 | 45.0 | 3.62e-01 | 96.4% | 33.9% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.65 | 46.0 | 3.72e-01 | 74.5% | 83.0% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.63 | 55.0 | 4.89e-01 | 96.4% | 77.9% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.63 | 52.0 | 4.49e-01 | 92.7% | 74.4% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 54.0 | 4.41e-01 | 98.2% | 65.0% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 51.0 | 4.49e-01 | 96.4% | 75.9% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.62 | 50.0 | 3.93e-01 | 94.5% | 54.0% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.61 | 47.0 | 4.18e-01 | 89.1% | 68.5% |
| 3da1A03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.60 | 48.0 | 3.59e-01 | 87.3% | 69.9% |
| 4nb5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 4.26e-01 | 92.7% | 77.6% |
| 1dv0A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 43.0 | 4.69e-01 | 87.3% | 95.6% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.55 | 40.0 | 3.63e-01 | 81.8% | 76.8% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 40.0 | 3.74e-01 | 81.8% | 72.2% |
| 2xi8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 39.0 | 3.76e-01 | 81.8% | 74.2% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 45.0 | 2.89e-01 | 100.0% | 55.3% |
| 1pyvA00 | 1.10.10.910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP synthase, F1 beta subunit | 0.53 | 34.0 | 3.49e-01 | 72.7% | 67.9% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.52 | 36.0 | 2.53e-01 | 74.5% | 20.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4667663 | 148.1.1.96 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP_like | 0.84 | 57.0 | 4.76e-01 | 70.9% | 45.6% |
| 3295850 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 54.0 | 5.66e-01 | 83.6% | 88.0% |
| 3310106 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.69 | 56.0 | 5.46e-01 | 89.1% | 81.7% |
| 3413518 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.65 | 56.0 | 5.14e-01 | 100.0% | 73.3% |
| 4140969 | 102.1.1.38 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N | 0.65 | 52.0 | 4.84e-01 | 94.5% | 71.4% |
| 5038065 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.64 | 52.0 | 4.79e-01 | 89.1% | 91.4% |
| 3546968 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 54.0 | 5.16e-01 | 98.2% | 86.2% |
| 4046570 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.60 | 48.0 | 4.74e-01 | 89.1% | 93.3% |
| 3970246 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.59 | 49.0 | 3.51e-01 | 100.0% | 65.8% |
| 2095513 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.59 | 50.0 | 4.93e-01 | 98.2% | 98.4% |
| 4952067 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.56 | 48.0 | 4.62e-01 | 96.4% | 100.0% |
| 4058428 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.56 | 35.0 | 3.58e-01 | 80.0% | 63.6% |
| None | — | 0.55 | 44.0 | 2.64e-01 | 100.0% | 16.6% | |
| 3662968 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 40.0 | 3.93e-01 | 81.8% | 86.7% |