Back to structures

NC_048140.1__YP_009818561.1__HOU96_gp01__00001

Bact-Vir

NC_048140.1__YP_009818561.1__HOU96_gp01__00001

Identity

Accession:
NC_048140 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-52
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01527.27 best HTH_Tnp_1 33.5 5.60e-08 100.0% 54.7%
CATH (95)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.86 76.0 6.51e-01 100.0% 63.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 72.0 6.68e-01 100.0% 75.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 72.0 5.88e-01 100.0% 52.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 71.0 6.53e-01 97.7% 73.2%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 72.0 6.30e-01 100.0% 63.6%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 68.0 6.24e-01 95.3% 69.0%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 74.0 6.84e-01 100.0% 83.3%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.83 70.0 4.48e-01 100.0% 20.4%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 69.0 6.68e-01 100.0% 85.4%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.82 71.0 5.40e-01 100.0% 48.5%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.82 69.0 5.47e-01 100.0% 45.7%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 71.0 6.14e-01 100.0% 63.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 69.0 5.87e-01 100.0% 58.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 68.0 5.76e-01 100.0% 56.0%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.81 71.0 4.94e-01 100.0% 30.3%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 70.0 6.15e-01 100.0% 66.2%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 69.0 6.91e-01 97.7% 95.5%
1xd7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 72.0 5.21e-01 100.0% 38.8%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.81 62.0 5.80e-01 88.4% 68.5%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 69.0 6.12e-01 100.0% 66.7%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 71.0 6.36e-01 100.0% 73.8%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 71.0 6.59e-01 100.0% 80.0%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.81 70.0 4.99e-01 100.0% 34.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 71.0 5.31e-01 100.0% 42.3%
2w48B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 68.0 6.45e-01 100.0% 90.4%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 69.0 6.17e-01 100.0% 68.3%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 69.0 6.20e-01 100.0% 70.5%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 6.48e-01 95.3% 84.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 6.20e-01 100.0% 72.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 5.45e-01 100.0% 48.3%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 6.72e-01 100.0% 88.0%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 65.0 6.49e-01 97.7% 88.9%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 6.06e-01 100.0% 65.7%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 6.19e-01 100.0% 71.0%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 6.20e-01 97.7% 85.2%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.79 69.0 4.89e-01 100.0% 32.8%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.79 66.0 4.70e-01 100.0% 31.2%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 66.0 6.24e-01 97.7% 78.4%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 6.05e-01 100.0% 71.4%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 69.0 6.09e-01 100.0% 69.8%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 6.06e-01 100.0% 73.0%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 70.0 6.06e-01 100.0% 71.2%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 5.56e-01 100.0% 56.6%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 66.0 5.84e-01 100.0% 64.2%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.93e-01 100.0% 70.3%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 4.60e-01 100.0% 29.1%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.93e-01 100.0% 67.2%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.26e-01 100.0% 47.2%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.92e-01 100.0% 70.3%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 67.0 6.21e-01 97.7% 87.3%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.65e-01 97.7% 66.2%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.78 65.0 4.06e-01 100.0% 17.2%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 5.05e-01 100.0% 41.0%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 4.55e-01 100.0% 28.8%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 67.0 5.71e-01 100.0% 61.1%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 67.0 5.82e-01 100.0% 64.2%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 67.0 5.67e-01 100.0% 63.0%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 5.91e-01 100.0% 71.4%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 5.63e-01 100.0% 64.3%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 68.0 5.46e-01 100.0% 53.7%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 5.16e-01 100.0% 46.7%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 4.61e-01 100.0% 31.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 4.60e-01 100.0% 31.9%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 4.57e-01 100.0% 31.0%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 61.0 6.30e-01 88.4% 100.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 4.49e-01 100.0% 29.3%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 68.0 5.54e-01 100.0% 66.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 4.69e-01 100.0% 35.7%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.43e-01 100.0% 56.4%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.12e-01 100.0% 46.8%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 5.22e-01 100.0% 64.7%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 63.0 5.28e-01 100.0% 56.2%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 67.0 5.80e-01 100.0% 75.4%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.00e-01 100.0% 56.5%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.40e-01 100.0% 63.9%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.07e-01 100.0% 51.1%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 64.0 5.38e-01 100.0% 66.7%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.74 61.0 5.70e-01 97.7% 75.0%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 5.39e-01 100.0% 69.7%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.73 60.0 4.63e-01 100.0% 39.4%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.22e-01 100.0% 73.3%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 63.0 4.91e-01 100.0% 45.4%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.72 63.0 5.27e-01 100.0% 65.8%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 5.43e-01 83.7% 97.8%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 4.88e-01 100.0% 59.3%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 4.13e-01 100.0% 29.1%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 4.96e-01 100.0% 69.0%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 58.0 5.96e-01 97.7% 100.0%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 60.0 3.87e-01 100.0% 66.3%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 54.0 5.28e-01 88.4% 85.1%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 56.0 4.50e-01 90.7% 82.9%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 53.0 4.71e-01 90.7% 61.5%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.66 50.0 4.99e-01 90.7% 84.8%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.66 49.0 5.04e-01 90.7% 92.7%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 48.0 4.76e-01 97.7% 83.7%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4280807 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.97 90.0 8.19e-01 100.0% 78.2%
3970884 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.95 87.0 6.54e-01 100.0% 45.3%
3983783 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.94 87.0 6.51e-01 100.0% 50.5%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.93 84.0 7.73e-01 100.0% 78.2%
3821461 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 83.0 6.69e-01 100.0% 53.8%
4008641 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.92 83.0 6.49e-01 100.0% 54.1%
3670113 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.90 80.0 6.21e-01 100.0% 48.9%
3288492 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.90 81.0 7.99e-01 100.0% 95.6%
3815501 101.1.10.37 alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.88 77.0 5.92e-01 100.0% 45.3%
4470400 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 75.0 6.39e-01 100.0% 60.0%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 74.0 6.86e-01 97.7% 74.5%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.87 78.0 6.92e-01 100.0% 71.7%
4929382 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 74.0 6.88e-01 100.0% 76.4%
5060818 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.86 77.0 6.34e-01 100.0% 60.0%
3879118 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.85 76.0 7.00e-01 100.0% 78.2%
5078377 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 75.0 7.15e-01 100.0% 86.0%
4031116 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 71.0 6.41e-01 97.7% 68.3%
3590541 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.84 73.0 4.80e-01 100.0% 23.9%
4927516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 74.0 6.66e-01 100.0% 71.7%
3305070 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.84 71.0 5.93e-01 100.0% 54.4%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.84 71.0 7.04e-01 100.0% 93.3%
5043001 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.84 73.0 5.48e-01 100.0% 41.0%
3401087 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.84 74.0 7.05e-01 100.0% 86.0%
4002185 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.84 72.0 5.98e-01 100.0% 56.0%
3232498 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 73.0 6.22e-01 100.0% 61.4%
4934485 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.83 71.0 6.04e-01 100.0% 59.5%
3922450 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 66.0 6.76e-01 97.7% 97.5%
4998375 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 75.0 5.90e-01 100.0% 54.1%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.83 73.0 6.21e-01 100.0% 61.4%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 74.0 6.42e-01 100.0% 66.2%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 73.0 6.20e-01 100.0% 61.4%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.83 70.0 5.35e-01 100.0% 41.0%
3944309 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 70.0 6.73e-01 100.0% 84.0%
3505559 101.1.6.19 alpha arrays › HTH › HTH › TrpR › PAX 0.83 74.0 6.10e-01 100.0% 57.3%
4863786 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.83 70.0 6.58e-01 100.0% 83.6%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 72.0 6.91e-01 100.0% 86.0%
3860590 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.82 70.0 6.75e-01 100.0% 88.0%
5057202 101.1.3.8 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r4_2 0.82 72.0 6.12e-01 100.0% 61.4%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.82 74.0 6.07e-01 100.0% 57.3%
3958970 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 72.0 5.89e-01 100.0% 53.8%
3989075 101.1.3.11 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.82 63.0 6.63e-01 88.4% 97.4%
3990848 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 71.0 6.57e-01 100.0% 78.2%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 69.0 6.64e-01 100.0% 84.0%
4541333 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 69.0 6.68e-01 100.0% 86.0%
3278040 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 67.0 6.02e-01 97.7% 66.7%
3587017 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.82 72.0 7.12e-01 100.0% 95.6%
4937081 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 70.0 6.16e-01 100.0% 66.2%
4946254 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 66.0 6.58e-01 97.7% 88.9%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 69.0 6.89e-01 95.3% 91.1%
3282047 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.81 72.0 5.44e-01 100.0% 44.0%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.81 67.0 5.47e-01 100.0% 49.4%
3959738 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 71.0 5.48e-01 100.0% 45.3%
5020571 101.1.1.101 alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 0.81 69.0 5.24e-01 100.0% 41.0%
3968864 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 67.0 5.68e-01 100.0% 56.0%
3987867 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 68.0 6.57e-01 100.0% 92.0%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.80 65.0 6.28e-01 95.3% 80.0%
5071227 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.80 69.0 4.10e-01 100.0% 16.3%
4987653 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.80 68.0 6.75e-01 100.0% 93.3%
3640035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 65.0 5.29e-01 100.0% 48.2%
3587644 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.80 64.0 5.78e-01 90.7% 78.3%
3280379 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.79 68.0 5.16e-01 100.0% 42.0%
3590885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 5.88e-01 100.0% 62.9%
3706139 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 68.0 6.50e-01 100.0% 86.0%
3701286 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.79 68.0 6.49e-01 100.0% 86.0%
4990647 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 62.0 5.87e-01 95.3% 72.7%
3589359 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.79 62.0 6.37e-01 88.4% 95.0%
5007028 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 67.0 6.25e-01 100.0% 78.2%
3997733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 68.0 5.97e-01 100.0% 75.4%
3603167 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.78 65.0 5.75e-01 100.0% 63.1%
4133358 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 69.0 4.67e-01 100.0% 28.4%
3283500 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.78 65.0 6.29e-01 100.0% 92.0%
5060990 2005.1.1.18 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.78 67.0 4.10e-01 100.0% 17.9%
3941460 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 66.0 5.88e-01 100.0% 69.2%
4139052 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 67.0 5.64e-01 100.0% 57.3%
1159643 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.78 67.0 5.68e-01 97.7% 67.6%
5016985 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 60.0 5.96e-01 93.0% 86.7%
3795916 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 64.0 6.42e-01 100.0% 97.8%
3947091 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.77 65.0 5.94e-01 100.0% 75.0%
4169333 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.77 65.0 4.75e-01 100.0% 47.2%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 6.29e-01 95.3% 91.1%
3589364 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.76 66.0 4.63e-01 100.0% 35.6%
3287536 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 6.32e-01 97.7% 100.0%
3976103 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 64.0 5.68e-01 100.0% 66.2%
2441957 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.76 65.0 5.16e-01 100.0% 50.0%
4944887 101.1.1.546 alpha arrays › HTH › HTH › Three-helical HTH › ThiN 0.76 63.0 4.67e-01 100.0% 36.7%
3753093 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.75 61.0 5.50e-01 100.0% 64.6%
3166394 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.75 65.0 4.98e-01 100.0% 45.0%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.75 57.0 5.32e-01 95.3% 65.0%
4008959 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 59.0 5.52e-01 93.0% 70.9%
3988145 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.75 60.0 5.86e-01 100.0% 82.0%
4963466 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.75 61.0 6.11e-01 95.3% 91.1%
4008046 101.1.1.348 alpha arrays › HTH › HTH › Three-helical HTH › PF30461 0.75 65.0 6.27e-01 100.0% 88.0%
4031535 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.75 63.0 5.76e-01 100.0% 71.7%
4008147 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.75 62.0 5.54e-01 100.0% 66.2%
3256356 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 5.53e-01 97.7% 65.6%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.75 63.0 4.97e-01 100.0% 46.3%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.73 60.0 5.67e-01 97.7% 76.4%
1738816 101.1.1.14 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.69 52.0 5.26e-01 90.7% 86.4%
4919061 101.1.1.14 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn 0.68 52.0 5.27e-01 93.0% 88.6%
D2 high residues 83-148
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23931.2 best Terminase_6 50.1 4.60e-13 95.5% 68.8%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.82 58.0 5.42e-01 74.2% 60.5%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.81 59.0 5.10e-01 75.8% 76.5%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.81 61.0 5.43e-01 78.8% 77.8%
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.81 70.0 4.64e-01 93.9% 74.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 64.0 5.35e-01 89.4% 93.8%
1nkvB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.77 51.0 3.42e-01 74.2% 19.0%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.77 54.0 5.12e-01 72.7% 67.1%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.77 52.0 5.43e-01 75.8% 77.0%
1oahA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.76 66.0 5.19e-01 98.5% 59.9%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.76 63.0 4.78e-01 92.4% 75.8%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.75 51.0 4.88e-01 71.2% 90.9%
1y4cA03 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.73 59.0 5.03e-01 92.4% 59.3%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 50.0 5.14e-01 72.7% 84.1%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.72 63.0 6.09e-01 100.0% 89.5%
1vljA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.71 59.0 4.19e-01 93.9% 35.1%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.71 62.0 4.64e-01 93.9% 64.7%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.71 60.0 4.33e-01 93.9% 79.8%
2okuA00 1.20.120.470 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain 0.71 61.0 5.04e-01 98.5% 80.3%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.71 50.0 4.14e-01 74.2% 41.5%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.71 61.0 5.11e-01 100.0% 69.4%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 49.0 4.49e-01 72.7% 83.5%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 62.0 4.86e-01 100.0% 62.2%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 60.0 5.07e-01 100.0% 83.9%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 53.0 5.06e-01 81.8% 71.8%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.69 60.0 4.20e-01 97.0% 84.7%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.69 52.0 5.06e-01 80.3% 73.0%
3c5iA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.69 61.0 4.05e-01 100.0% 63.2%
3mxtA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.68 55.0 4.80e-01 89.4% 92.0%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 48.0 4.49e-01 77.3% 67.8%
3fd9A03 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 49.0 4.82e-01 78.8% 86.3%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.67 57.0 4.84e-01 100.0% 66.4%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 47.0 4.40e-01 74.2% 68.7%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 54.0 4.56e-01 90.9% 100.0%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.66 56.0 4.68e-01 100.0% 69.4%
3ltoA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.66 50.0 4.03e-01 83.3% 68.7%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 46.0 4.47e-01 72.7% 66.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.65 58.0 5.27e-01 100.0% 73.3%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.65 50.0 4.88e-01 84.8% 78.4%
3kdrA01 1.20.1270.210 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 54.0 4.69e-01 97.0% 90.6%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.64 43.0 4.12e-01 74.2% 58.0%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.64 51.0 4.95e-01 93.9% 78.9%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.03e-01 78.8% 52.5%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 46.0 4.58e-01 81.8% 100.0%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.60 43.0 3.51e-01 84.8% 38.6%
5jxxA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.60 43.0 4.40e-01 81.8% 77.3%
7zmgL01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 47.0 4.48e-01 87.9% 85.0%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 43.0 4.11e-01 81.8% 80.5%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 40.0 3.91e-01 74.2% 68.9%
2e1qC02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.57 44.0 3.87e-01 97.0% 54.9%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.57 49.0 4.32e-01 100.0% 68.9%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.56 35.0 3.78e-01 98.5% 73.7%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.56 47.0 4.29e-01 95.5% 77.8%
4wesB03 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.55 38.0 3.61e-01 81.8% 60.8%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.55 38.0 3.55e-01 81.8% 57.8%
1eljA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 42.0 3.02e-01 89.4% 77.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
149872 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.86 61.0 5.73e-01 74.2% 75.9%
5046441 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.85 58.0 3.68e-01 71.2% 83.4%
5060007 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.83 61.0 4.72e-01 77.3% 83.7%
4933045 601.7.1.3 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 0.79 68.0 6.25e-01 93.9% 98.8%
5039854 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.78 59.0 5.66e-01 80.3% 85.3%
4965940 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.77 63.0 4.79e-01 87.9% 62.8%
4953182 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.77 59.0 4.22e-01 81.8% 32.2%
3612019 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 69.0 6.18e-01 100.0% 88.9%
3969411 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.76 68.0 4.40e-01 100.0% 69.8%
4933737 3567.1.1.192 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › EMC3_TMCO1 0.76 58.0 5.13e-01 81.8% 57.9%
4612826 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.75 57.0 5.31e-01 80.3% 78.8%
5035839 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.74 68.0 6.52e-01 100.0% 96.0%
3589798 632.1.1.14 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › EzrA 0.74 62.0 5.55e-01 93.9% 74.7%
4367113 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.74 64.0 5.49e-01 97.0% 88.6%
3699668 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.74 64.0 4.27e-01 100.0% 89.1%
3573590 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.74 62.0 5.41e-01 93.9% 71.0%
3597736 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.73 61.0 5.57e-01 89.4% 84.7%
3714237 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.72 65.0 5.56e-01 100.0% 63.8%
4043561 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.72 59.0 4.98e-01 89.4% 90.0%
4214525 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.72 64.0 5.57e-01 100.0% 89.0%
4417773 4002.1.1.0 alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes 0.72 64.0 4.42e-01 100.0% 89.1%
5075878 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.72 62.0 5.89e-01 100.0% 82.5%
4339647 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.71 49.0 3.22e-01 72.7% 56.9%
4928325 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.71 56.0 3.96e-01 86.4% 61.1%
3579339 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 48.0 4.79e-01 71.2% 68.6%
4988178 633.29.1.0 alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 0.71 64.0 5.64e-01 100.0% 75.8%
4622191 192.29.1.258 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BREX_BrxC_4th 0.71 62.0 4.51e-01 100.0% 85.9%
3621403 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.70 51.0 3.95e-01 78.8% 36.7%
4972788 601.2.1.0 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes 0.70 56.0 4.87e-01 93.9% 55.5%
3577099 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.70 51.0 3.89e-01 78.8% 35.5%
2893266 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.70 49.0 4.39e-01 72.7% 71.7%
4653531 632.1.1.14 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › EzrA 0.69 61.0 5.18e-01 100.0% 68.2%
4614725 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.69 52.0 4.82e-01 81.8% 63.5%
3216326 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.68 54.0 3.52e-01 87.9% 55.4%
3946910 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.68 51.0 3.69e-01 80.3% 79.5%
4934610 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.68 60.0 5.54e-01 100.0% 77.6%
3442785 611.7.1.11 alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › DUF7032 0.68 54.0 4.29e-01 89.4% 85.7%
5070891 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 48.0 4.59e-01 77.3% 65.0%
3236455 3470.1.1.35 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF19 0.66 56.0 4.08e-01 97.0% 42.1%
3706915 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.66 53.0 5.28e-01 100.0% 85.7%
3499018 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 52.0 4.71e-01 89.4% 87.4%
5033439 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.65 56.0 5.53e-01 97.0% 94.3%
3884022 603.1.1.165 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TMEM151 0.65 46.0 4.19e-01 77.3% 75.8%
2755856 5059.1.1.4 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.64 45.0 3.37e-01 74.2% 73.4%
4883675 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.63 47.0 4.64e-01 81.8% 74.6%
3672790 611.9.1.4 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.63 53.0 4.27e-01 100.0% 51.7%
3911935 632.26.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.62 53.0 4.89e-01 100.0% 73.3%
3365824 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.62 50.0 3.26e-01 90.9% 94.7%
4881188 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.62 50.0 3.95e-01 92.4% 40.9%
4020310 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.61 47.0 3.06e-01 86.4% 18.7%
3258588 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 50.0 4.03e-01 100.0% 83.6%
3995271 109.1.1.0 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.59 48.0 4.12e-01 95.5% 73.9%