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NC_048141.1__YP_009818670.1__HOU97_gp54__00054

Bact-Vir

NC_048141.1__YP_009818670.1__HOU97_gp54__00054

Identity

Accession:
NC_048141 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Getalongvirus› Gordonia_phage_Kenna

TaxID: 2499025

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-241
PDB
Domain cluster: rep: KP836356.2__AJW76984.1__UF09_18__00029__D2-85_102-203
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12686.13 best DUF3800 37.2 6.40e-09 89.5% 99.3%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ekeA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 65.0 7.02e-01 92.0% 98.2%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 37.0 4.74e-01 84.0% 93.9%
3n4pC00 3.30.420.320 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › DNA-packaging terminase, C-terminal nuclease domain 0.63 45.0 4.42e-01 100.0% 67.0%
1pzxB01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.63 31.0 3.90e-01 83.5% 76.2%
2qxlB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 37.0 4.41e-01 87.0% 86.6%
3fdjA01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.62 29.0 3.76e-01 83.5% 78.0%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.60 35.0 4.22e-01 97.0% 85.6%
1tq8A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 34.0 4.16e-01 100.0% 88.2%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 39.0 4.45e-01 86.5% 92.2%
5nblA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 38.0 4.23e-01 84.0% 85.9%
4ccsA02 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 29.0 3.55e-01 81.0% 76.2%
2ex2A02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.56 30.0 3.99e-01 90.5% 99.0%
2rbgA00 3.40.50.11100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 34.0 4.19e-01 100.0% 96.0%
2khoA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 38.0 4.24e-01 86.0% 88.1%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 33.0 4.02e-01 100.0% 92.2%
1w5dA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.54 29.0 3.85e-01 90.5% 99.0%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 45.0 4.45e-01 88.5% 96.3%
2ymbA00 3.30.870.30 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › MITD, C-terminal phospholipase D-like domain 0.53 33.0 3.78e-01 97.5% 81.0%
1edzA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.53 27.0 3.23e-01 84.0% 70.2%
1ig3A02 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.53 37.0 4.23e-01 81.0% 95.2%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 32.0 3.79e-01 100.0% 86.2%
4rweA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 30.0 3.69e-01 84.0% 85.9%
3jb9X01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 4.05e-01 84.0% 92.1%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 34.0 3.78e-01 83.5% 82.8%
2b99C00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.52 31.0 3.52e-01 83.5% 76.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969420 2484.1.1.264 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 0.89 85.0 8.49e-01 100.0% 97.5%
4950366 2484.1.1.264 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 0.88 84.0 8.28e-01 99.0% 99.0%
3286059 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 72.0 7.71e-01 100.0% 96.6%
4965255 2484.1.1.264 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 0.82 78.0 7.35e-01 98.5% 97.8%
5019748 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.81 48.0 6.13e-01 89.5% 98.3%
5049682 2484.1.1.264 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 0.79 76.0 7.49e-01 100.0% 99.0%
5014957 2484.1.1.292 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26630 0.74 69.0 6.45e-01 100.0% 92.7%
5024122 2484.1.1.53 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.60 41.0 4.44e-01 84.0% 81.8%
3386935 2484.1.1.53 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB_Mbl 0.55 38.0 4.35e-01 84.0% 92.7%
5011071 2005.1.1.32 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF5751 0.55 34.0 4.11e-01 100.0% 92.3%
4965301 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 35.0 4.27e-01 100.0% 98.4%
3427403 2008.1.1.151 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 0.53 36.0 3.95e-01 73.5% 81.8%
3292286 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.53 31.0 3.74e-01 80.0% 88.0%
4944465 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.53 35.0 3.85e-01 84.0% 81.2%
1734342 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.53 32.0 3.76e-01 100.0% 84.4%
5069722 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.52 45.0 3.82e-01 92.0% 86.7%
5077825 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.52 32.0 3.60e-01 81.5% 77.4%
4946606 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 35.0 3.76e-01 83.5% 79.3%
4511125 2007.1.6.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH 0.51 26.0 3.19e-01 78.5% 75.0%
3245345 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.51 28.0 3.07e-01 80.0% 64.4%
4977260 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 4.17e-01 80.5% 93.9%
1253076 2007.1.2.10 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 0.51 32.0 3.95e-01 94.5% 99.2%
None — 0.50 36.0 3.47e-01 74.0% 97.9%