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NC_048144.1__YP_009818866.1__HOV00_gp34__00034

Bact-Vir

NC_048144.1__YP_009818866.1__HOV00_gp34__00034

Identity

Accession:
NC_048144 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-123
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13479.13 best AAA_24 45.6 9.30e-12 99.2% 63.1%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c9kB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.80 74.0 6.44e-01 98.4% 74.4%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.80 75.0 5.96e-01 100.0% 69.0%
8db3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 70.0 5.75e-01 100.0% 64.9%
2gzaB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 55.0 4.59e-01 100.0% 47.9%
3rjtA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.66 53.0 4.40e-01 86.2% 80.8%
3r7wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 50.0 4.37e-01 82.1% 68.1%
3ix7A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.63 39.0 3.89e-01 81.3% 58.0%
6jdrA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 53.0 5.06e-01 100.0% 76.9%
3lkbA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 52.0 4.66e-01 92.7% 64.7%
2qaiB00 3.40.50.10580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F 0.63 39.0 4.45e-01 79.7% 84.6%
3rc3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 58.0 5.29e-01 100.0% 77.4%
2dg7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 46.0 4.02e-01 79.7% 79.6%
2aefA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 42.0 4.35e-01 91.9% 77.4%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 54.0 4.49e-01 100.0% 93.6%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 4.45e-01 90.2% 92.4%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.59 52.0 4.01e-01 96.7% 93.3%
1xtiA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 54.0 4.89e-01 99.2% 79.3%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 42.0 3.70e-01 75.6% 75.3%
3c8uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 48.0 4.16e-01 94.3% 100.0%
4qgsA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 51.0 4.61e-01 98.4% 95.3%
5hfjC00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 52.0 4.37e-01 99.2% 93.1%
3l84A01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.57 48.0 3.59e-01 93.5% 65.6%
3egcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 44.0 4.28e-01 82.1% 75.2%
5yvrA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 51.0 4.35e-01 99.2% 90.4%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 48.0 4.45e-01 93.5% 82.6%
2g40A00 3.40.50.10420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like 0.56 50.0 4.58e-01 100.0% 89.0%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.55 48.0 3.63e-01 94.3% 66.5%
4fr2A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 49.0 4.31e-01 100.0% 93.5%
3vzbB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.54 44.0 4.21e-01 100.0% 74.8%
2pn1A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 4.18e-01 97.6% 82.9%
1j0aA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 41.0 3.46e-01 82.9% 89.1%
2csuA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.53 48.0 4.36e-01 99.2% 87.3%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 27.0 3.27e-01 74.8% 72.5%
4p47A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.53 46.0 3.44e-01 95.9% 69.4%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 39.0 2.97e-01 78.9% 69.4%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 43.0 4.05e-01 88.6% 79.2%
5f2hA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 3.56e-01 81.3% 92.8%
2f48A01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 44.0 3.43e-01 93.5% 83.5%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 29.0 3.32e-01 74.8% 71.3%
1q0qA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 4.04e-01 91.9% 76.7%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.51 36.0 3.53e-01 73.2% 73.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 42.0 4.03e-01 91.1% 82.1%
1kjqA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 4.25e-01 100.0% 91.7%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.51 26.0 2.92e-01 76.4% 62.1%
1nqkA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 44.0 3.27e-01 98.4% 90.1%
2zskA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 39.0 4.05e-01 82.9% 90.5%
1rhcA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.50 43.0 3.31e-01 100.0% 94.5%
1ashA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.80e-01 86.2% 77.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998489 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.81 76.0 6.05e-01 100.0% 69.6%
None 0.81 76.0 5.75e-01 100.0% 51.3%
None 0.81 76.0 5.62e-01 100.0% 47.7%
None 0.80 75.0 5.75e-01 100.0% 52.3%
4452602 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 75.0 5.27e-01 100.0% 39.4%
4485228 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 74.0 5.23e-01 100.0% 38.3%
None 0.80 74.0 5.66e-01 100.0% 51.3%
3356924 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 74.0 5.41e-01 100.0% 56.1%
None 0.79 74.0 5.59e-01 100.0% 49.5%
3908434 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.79 74.0 5.44e-01 100.0% 56.1%
9669 2004.1.1.83 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CobU 0.78 72.0 6.40e-01 98.4% 72.9%
3788005 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 71.0 5.29e-01 100.0% 47.5%
5077007 2004.1.1.129 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zot 0.76 70.0 5.77e-01 100.0% 65.6%
3246302 2004.1.1.1021 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29013 0.66 44.0 4.00e-01 78.9% 51.2%
4031801 2007.1.8.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 0.64 39.0 4.20e-01 82.1% 71.4%
5012760 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.63 44.0 4.18e-01 81.3% 60.0%
3421429 2004.1.1.44 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK 0.62 54.0 4.37e-01 99.2% 94.1%
3238926 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 50.0 4.44e-01 91.9% 60.0%
5049491 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.60 45.0 4.58e-01 100.0% 80.0%
4983562 2002.1.1.113 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CdhD 0.60 54.0 4.02e-01 100.0% 77.2%
3705161 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.60 48.0 4.76e-01 99.2% 81.5%
4978525 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.58 40.0 3.17e-01 70.7% 68.2%
3411742 2004.1.1.41 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.57 44.0 3.67e-01 82.1% 75.9%
3620121 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.57 49.0 4.16e-01 94.3% 85.9%
3693307 2007.1.7.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.57 52.0 4.42e-01 99.2% 73.8%
3902570 2004.1.1.41 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.57 43.0 3.56e-01 81.3% 73.4%
3593028 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 4.51e-01 100.0% 77.2%
4647835 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.56 31.0 2.53e-01 80.5% 27.0%
2700287 2007.2.5.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase 0.56 41.0 4.35e-01 95.9% 90.3%
5022287 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.56 51.0 4.48e-01 100.0% 71.7%
4990030 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 50.0 4.11e-01 100.0% 81.1%
4946570 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 3.75e-01 82.1% 87.9%
9448 2003.1.7.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom 0.56 50.0 4.58e-01 100.0% 89.0%
3587924 2007.1.7.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.56 50.0 4.70e-01 99.2% 97.3%
4947959 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 42.0 3.74e-01 81.3% 87.8%
4940350 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 3.76e-01 81.3% 90.6%
4013716 2007.1.4.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain 0.55 43.0 3.90e-01 83.7% 67.1%
5043092 7531.1.1.1 a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.55 48.0 3.84e-01 98.4% 66.4%
4981071 7516.1.1.79 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.54 38.0 2.68e-01 73.2% 93.6%
3314969 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 47.0 4.44e-01 95.1% 91.7%
4030340 2007.1.4.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.53 44.0 2.80e-01 92.7% 35.1%
158724 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 43.0 4.05e-01 88.6% 78.7%
4275183 2003.1.1.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Slo-like_RCK 0.52 44.0 4.02e-01 94.3% 70.0%
4569741 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.51 27.0 2.83e-01 78.0% 53.0%
3734611 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 40.0 2.75e-01 85.4% 62.1%
3745853 603.2.1.1 alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.50 36.0 3.20e-01 75.6% 91.9%
D2 medium residues 124-221
PDB
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jzmA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 38.0 2.83e-01 91.8% 25.8%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 38.0 3.06e-01 82.7% 82.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032348 2004.1.1.347 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_24 0.80 73.0 5.21e-01 95.9% 37.6%
4962866 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.59 38.0 2.95e-01 91.8% 28.4%
5077272 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.57 37.0 2.81e-01 91.8% 26.7%
5023262 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.55 27.0 3.16e-01 77.6% 66.2%