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NC_048147.1__YP_009819155.1__HOV04_gp11__00011

Bact-Vir

NC_048147.1__YP_009819155.1__HOV04_gp11__00011

Identity

Accession:
NC_048147 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-131
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.54 29.0 3.82e-01 89.9% 98.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 28.0 3.68e-01 75.2% 98.5%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 33.0 3.60e-01 74.4% 79.4%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3576134 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 19.0 3.07e-01 83.7% 64.0%
4932084 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 28.0 4.03e-01 73.6% 100.0%
4025700 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 41.0 4.40e-01 79.8% 86.4%
4880088 10.14.1.1 beta sandwiches › jelly-roll › Trp RNA-binding attenuation protein (TRAP) › Trp RNA-binding attenuation protein (TRAP) › TrpBP 0.55 29.0 3.79e-01 86.8% 95.6%
4565732 385.1.1.3 few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Hormone_6 0.51 26.0 3.40e-01 79.1% 93.8%
4550532 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.50 26.0 3.04e-01 72.9% 70.0%