←Back to structures
NC_048147.1__YP_009819155.1__HOV04_gp11__00011
Bact-VirNC_048147.1__YP_009819155.1__HOV04_gp11__00011
Identity
- Accession:
- NC_048147 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Lindbergviridae›
Carpasinavirus›
Xanthomonas_phage_XcP1
TaxID: 2785027
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-131
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.54 | 29.0 | 3.82e-01 | 89.9% | 98.5% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 28.0 | 3.68e-01 | 75.2% | 98.5% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 33.0 | 3.60e-01 | 74.4% | 79.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3576134 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 19.0 | 3.07e-01 | 83.7% | 64.0% |
| 4932084 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 28.0 | 4.03e-01 | 73.6% | 100.0% |
| 4025700 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 41.0 | 4.40e-01 | 79.8% | 86.4% |
| 4880088 | 10.14.1.1 ↗ | beta sandwiches › jelly-roll › Trp RNA-binding attenuation protein (TRAP) › Trp RNA-binding attenuation protein (TRAP) › TrpBP | 0.55 | 29.0 | 3.79e-01 | 86.8% | 95.6% |
| 4565732 | 385.1.1.3 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Hormone_6 | 0.51 | 26.0 | 3.40e-01 | 79.1% | 93.8% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.50 | 26.0 | 3.04e-01 | 72.9% | 70.0% |