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NC_048151.1__YP_009819660.1__HOV08_gp148__00138

Bact-Vir

NC_048151.1__YP_009819660.1__HOV08_gp148__00138

Identity

Accession:
NC_048151 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Pogseptimavirus› Vibrio_phage_VspSw_1

TaxID: 2484249

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-63
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6yetA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.70 58.0 5.13e-01 100.0% 67.0%
4i5lB01 1.10.238.230 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.69 60.0 5.06e-01 100.0% 65.0%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 51.0 4.99e-01 78.9% 80.3%
3e70C01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.68 57.0 4.91e-01 100.0% 93.8%
3e46A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 45.0 4.80e-01 78.9% 93.0%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 46.0 4.49e-01 77.2% 65.2%
1dv0A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 45.0 4.86e-01 78.9% 93.3%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.65 53.0 4.75e-01 100.0% 88.8%
2lvaA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 44.0 4.82e-01 77.2% 95.5%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 40.0 3.86e-01 87.7% 55.2%
7osfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 52.0 3.63e-01 100.0% 33.0%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.62 50.0 4.69e-01 98.2% 97.4%
1ixkA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.61 39.0 3.30e-01 75.4% 36.2%
2a5yB03 1.10.8.490 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ced-4 linker helical domain-like 0.59 43.0 3.97e-01 96.5% 59.0%
3ci0K02 1.10.40.60 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like 0.58 48.0 3.97e-01 98.2% 83.2%
3kp1E02 1.10.8.1000 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like 0.58 41.0 3.96e-01 78.9% 77.1%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 38.0 4.09e-01 73.7% 81.2%
2fmlB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.06e-01 80.7% 92.2%
1sr9B03 1.10.1220.20 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › 0.56 40.0 4.26e-01 87.7% 100.0%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.18e-01 98.2% 60.1%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 44.0 3.54e-01 100.0% 83.1%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 41.0 3.75e-01 93.0% 85.0%
2l1aA00 3.10.20.530 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 40.0 3.38e-01 94.7% 84.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3802324 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.81 54.0 5.92e-01 78.9% 88.9%
3964078 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.79 54.0 5.53e-01 78.9% 74.5%
4083751 103.1.1.50 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › EF-Ts_N 0.76 52.0 5.31e-01 78.9% 74.5%
4886682 230.3.1.3 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF-Ts_N 0.76 52.0 5.48e-01 78.9% 82.0%
3310512 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.72 49.0 5.43e-01 78.9% 100.0%
3595001 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.68 48.0 5.15e-01 75.4% 95.6%
4991581 103.1.1.19 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HYPK_UBA 0.68 46.0 4.88e-01 78.9% 83.7%
4030158 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 44.0 4.77e-01 70.2% 91.1%
3573326 103.1.1.27 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 0.65 45.0 4.38e-01 77.2% 64.6%
4476781 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.64 50.0 4.75e-01 86.0% 84.3%
3204020 103.1.1.1 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.64 42.0 4.44e-01 75.4% 81.2%
4003672 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 47.0 4.69e-01 82.5% 86.7%
3707633 103.1.1.1 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.64 43.0 4.47e-01 78.9% 82.0%
3619173 103.1.1.27 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 0.63 44.0 4.53e-01 77.2% 78.2%
3200429 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 44.0 2.74e-01 77.2% 24.3%
3517113 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 41.0 4.46e-01 78.9% 88.9%
4643549 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.61 41.0 3.81e-01 84.2% 53.3%
2724457 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.60 43.0 4.51e-01 78.9% 100.0%
3402200 196.1.1.0 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS 0.60 47.0 3.79e-01 100.0% 40.7%
3295850 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 41.0 4.28e-01 78.9% 86.0%
3817423 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.57 44.0 3.44e-01 86.0% 44.6%
3413676 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 40.0 2.74e-01 75.4% 65.0%
3812553 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.56 43.0 3.32e-01 86.0% 39.3%
3815453 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.56 43.0 3.78e-01 86.0% 61.1%
4043835 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.56 43.0 3.61e-01 87.7% 89.5%
3304578 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 2.49e-01 86.0% 10.5%
3837892 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 2.62e-01 86.0% 17.9%
4232456 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.54 41.0 3.46e-01 86.0% 53.3%
3223546 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.54 44.0 3.72e-01 100.0% 56.5%
4246280 589.1.2.1 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.53 37.0 2.56e-01 73.7% 62.4%
4375034 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.53 40.0 4.12e-01 86.0% 92.7%
5051816 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.37e-01 77.2% 60.0%
3954413 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 42.0 3.80e-01 100.0% 93.3%
4664047 1045.1.1.3 ↗ alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Mre11_C 0.51 35.0 3.77e-01 71.9% 93.3%