←Back to structures
NC_048153.1__YP_009819819.1__HOV10_gp47__00047
Bact-VirNC_048153.1__YP_009819819.1__HOV10_gp47__00047
Identity
- Accession:
- NC_048153 ↗
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Taxonomy
TaxID: 2500795
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-38_77-206
Domain cluster:
rep: KT221034.1__ALF00197.1__SF3_660__00066__D11-32_75-189
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 35.0 | 4.19e-01 | 96.2% | 68.5% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.62 | 31.0 | 3.46e-01 | 98.7% | 58.9% |
| 8hk0C01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 39.0 | 4.04e-01 | 99.4% | 66.0% |
| 1h6gA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 39.0 | 4.37e-01 | 100.0% | 86.3% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.58 | 39.0 | 4.56e-01 | 81.1% | 98.2% |
| 1auwA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 38.0 | 3.34e-01 | 100.0% | 50.0% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.53 | 34.0 | 3.83e-01 | 100.0% | 84.2% |
| 4gc0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 41.0 | 3.55e-01 | 83.0% | 84.3% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 28.0 | 3.45e-01 | 93.1% | 86.2% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 32.0 | 3.61e-01 | 100.0% | 82.0% |
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.51 | 38.0 | 3.02e-01 | 100.0% | 40.6% |
| 5yixA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.51 | 41.0 | 3.21e-01 | 83.6% | 79.9% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.50 | 30.0 | 3.47e-01 | 95.0% | 84.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3404903 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.61 | 33.0 | 3.14e-01 | 79.2% | 42.6% |
| 4244236 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.60 | 38.0 | 4.44e-01 | 83.6% | 90.9% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.58 | 35.0 | 3.13e-01 | 88.7% | 41.8% |
| 4976479 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.53 | 38.0 | 3.25e-01 | 100.0% | 45.9% |
| 4816883 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.53 | 43.0 | 3.90e-01 | 86.8% | 66.2% |
| 5083210 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.52 | 28.0 | 3.29e-01 | 83.6% | 73.6% |
| 5048142 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.52 | 40.0 | 2.65e-01 | 79.9% | 71.6% |
| 3241070 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 39.0 | 3.39e-01 | 79.9% | 92.2% |
| 4449671 | 5059.1.1.6 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › CSG2 | 0.50 | 44.0 | 3.50e-01 | 96.9% | 99.4% |
D2
high
residues 212-277
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.61 | 44.0 | 2.97e-01 | 77.3% | 45.0% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.61 | 43.0 | 2.95e-01 | 74.2% | 48.0% |
| 1jrrA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.61 | 45.0 | 3.71e-01 | 80.3% | 75.4% |
| 2j0wA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 44.0 | 4.16e-01 | 83.3% | 96.3% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.06e-01 | 87.9% | 82.8% |
| 1nunA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 46.0 | 3.72e-01 | 92.4% | 90.6% |
| 4rmmA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 44.0 | 3.59e-01 | 87.9% | 88.1% |
| 8ciwA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.56 | 43.0 | 3.55e-01 | 87.9% | 98.5% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 45.0 | 3.75e-01 | 87.9% | 64.0% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 45.0 | 4.50e-01 | 90.9% | 87.9% |
| 2o8bB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.55 | 41.0 | 3.38e-01 | 81.8% | 43.5% |
| 4bh5A00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.55 | 41.0 | 3.33e-01 | 80.3% | 54.6% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 38.0 | 3.23e-01 | 77.3% | 94.7% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 42.0 | 3.54e-01 | 86.4% | 89.1% |
| 3bpnC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.48e-01 | 78.8% | 90.3% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 39.0 | 3.28e-01 | 86.4% | 76.7% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 3.67e-01 | 97.0% | 65.5% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.52 | 41.0 | 3.62e-01 | 90.9% | 82.4% |
| 3madA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 42.0 | 3.47e-01 | 95.5% | 56.5% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 44.0 | 3.27e-01 | 97.0% | 73.0% |
| 3nc3B00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 42.0 | 2.64e-01 | 92.4% | 25.2% |
| 4a18O00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.51 | 42.0 | 3.48e-01 | 98.5% | 56.7% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.51 | 41.0 | 3.46e-01 | 90.9% | 79.8% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.51 | 39.0 | 3.84e-01 | 84.8% | 87.3% |
| 1g2bA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.50 | 35.0 | 3.59e-01 | 83.3% | 80.6% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.62e-01 | 92.4% | 84.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3709516 | 2004.1.1.427 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N | 0.59 | 46.0 | 3.55e-01 | 86.4% | 67.3% |
| 4096980 | 243.5.1.6 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cyto_heme_lyase | 0.57 | 43.0 | 3.46e-01 | 80.3% | 51.5% |
| 4439346 | 3509.1.1.0 ↗ | a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain | 0.56 | 48.0 | 2.72e-01 | 98.5% | 8.7% |
| 4368394 | 3509.1.1.0 ↗ | a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain | 0.56 | 48.0 | 2.81e-01 | 98.5% | 13.1% |
| 3208301 | 66.1.1.3 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox | 0.54 | 43.0 | 3.63e-01 | 89.4% | 88.3% |
| 3626487 | 101.1.2.194 ↗ | alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH | 0.53 | 41.0 | 3.43e-01 | 87.9% | 46.4% |
| 432602 | 2.1.1.93 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB4_dimer | 0.52 | 39.0 | 3.28e-01 | 86.4% | 76.7% |
| 3937294 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.51 | 42.0 | 3.19e-01 | 97.0% | 36.1% |
| 3814098 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.51 | 42.0 | 3.85e-01 | 93.9% | 78.9% |
| 1807455 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.51 | 42.0 | 3.48e-01 | 98.5% | 56.7% |
| 3503710 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 2.53e-01 | 92.4% | 16.3% |
| 4111598 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.51 | 32.0 | 3.10e-01 | 74.2% | 54.7% |
| 3611221 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.51 | 38.0 | 3.38e-01 | 84.8% | 57.1% |
| 3930210 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 39.0 | 2.73e-01 | 86.4% | 41.6% |
| 4927056 | 300.1.1.6 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB | 0.51 | 44.0 | 3.44e-01 | 100.0% | 81.9% |
| 3710582 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 41.0 | 3.57e-01 | 90.9% | 93.3% |
| 3278065 | 4312.1.1.4 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 | 0.50 | 40.0 | 3.43e-01 | 89.4% | 61.8% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 40.0 | 3.63e-01 | 92.4% | 75.8% |
| 3225341 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.50 | 38.0 | 2.64e-01 | 84.8% | 29.8% |